Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54400 358 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G15530 323 / 1e-110 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23360 56 / 1e-08 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037890 [exp] 449 / 3e-160 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029124 [exp] 61 / 3e-10 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10013038 [exp] 58 / 2e-09 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G128300 [exp] 390 / 9e-137 AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.001G405200 [exp] 385 / 7e-135 AT5G54400 396 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 58 / 2e-09 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.006G150500 [exp] 42 / 0.0003 AT4G29590 415 / 9e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.005G245800 [exp] 41 / 0.0006 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.002G016300 [exp] 41 / 0.0008 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF08241 [flax] [poplar] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Lus10038599 pacid=23143040 polypeptide=Lus10038599 locus=Lus10038599.g ID=Lus10038599.BGIv1.0 annot-version=v1.0 ATGTCGCTAGCGATCAGAGCTCATCCCCACCATTTAACCCCTAAAATGGGGAAATCCAGCCCTCCAAACCGTGACTGGACGCAGATCTACGCTATCTACG GCATGGATCAGTGGCACACTCTACTGTTCCTCTTGTTCCACGCCCTCCTCTTCTCAATTCTCTCCCTCCTCTTCCTCTTCTACTTCGACCCTTTCTGCAA TTTCCTCCAATCGGCGTTCCCTCTTGTCTTCGCCGGAATCGGGGCCGCAAGGTTTGCCGCTGGGTTCACAGGCTGCGTTGCGTCCCTCTCCGCCTTGTGC CTCTTCTTCGCCGCCGGCAACTTCTTCTACAGCTCCGTCGCCTTGCAGCATGAGATGGCCCAGAGGATCGTCGGCCATGTGAACGACTGGTCGTCGGTGA AATTGGCCCTCGACATCGGGTGTGGCCGAGGGATTCTGCTCAATTCGGTCGCGACCCAGTTGAAGAAAACCGGTAGCTCCGGCCGGGTCGTCGGGTTGGA CCGGTCTAAAAGGACCACACTCTCCACGCTCCGTACCGCAAACATGGAAGGTGTGGGAGAGTATGTGACTTGCAGGGAAGGAGATGTTCGGAGCTTGCCG TTCGGAGACAACTACTTCGACGTGGTGGTGTCGGCGGTTTTCTTCCACACGGTGGGGAAGGAGTACGGACACCGGACGGTGGAAGCGGCGGCGGAGAGGA TGCGGGTGTTGGGGGAGATGGTTCGGGTACTGAAACCCGGTGGGGTGGGTGTTGTGTGGGACCTGGTCCATGTGCCTGAGTACGTGAGGAGGCTTCAGGA GCTGAAGATGGAGGAAATTCGGGTGTCGGAGCGGGTCACGGCGTTCATGGTGAGCAGTCACATTCTGTCGTTCAGGAAGCCCAAGCAACAGCAGCAGCAG CTTTCGATGACCGGTATGGATGAGGTCCGTTTGGATTGGAGATTTTTTAATTTGTGA
AA sequence Show only first row Show all	>Lus10038599 pacid=23143040 polypeptide=Lus10038599 locus=Lus10038599.g ID=Lus10038599.BGIv1.0 annot-version=v1.0 MSLAIRAHPHHLTPKMGKSSPPNRDWTQIYAIYGMDQWHTLLFLLFHALLFSILSLLFLFYFDPFCNFLQSAFPLVFAGIGAARFAAGFTGCVASLSALC LFFAAGNFFYSSVALQHEMAQRIVGHVNDWSSVKLALDIGCGRGILLNSVATQLKKTGSSGRVVGLDRSKRTTLSTLRTANMEGVGEYVTCREGDVRSLP FGDNYFDVVVSAVFFHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLVHVPEYVRRLQELKMEEIRVSERVTAFMVSSHILSFRKPKQQQQQ LSMTGMDEVRLDWRFFNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54400			S-adenosyl-L-methionine-depend...		Lus10038599 [exp]	0	1
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10041489 [exp]	7.0	0.8034
AT3G07320			O-Glycosyl hydrolases family 1...		Lus10038211 [exp]	7.1	0.7759
AT5G55190		RAN3, ATRAN3	RAN GTPase 3 (.1)		Lus10043297 [exp]	7.9	0.8012
AT4G39840			unknown protein		Lus10024058 [exp]	9.6	0.7844
AT1G08960		CCX5, AtCXX5, A...	cation calcium exchanger 5, A...		Lus10029938 [exp]	10.8	0.7960
AT1G10020			Protein of unknown function (D...		Lus10032807 [exp]	12.3	0.7718
AT2G20300		ALE2	Abnormal Leaf Shape 2, Protein...		Lus10022848 [exp]	13.0	0.7727
AT5G66520			Tetratricopeptide repeat (TPR)...		Lus10015718 [exp]	15.2	0.7680
AT1G13250		GATL3	galacturonosyltransferase-like...		Lus10034274 [exp]	16.1	0.7733
AT1G49850			RING/U-box superfamily protein...		Lus10002113 [exp]	21.2	0.7694

Compare expression of checked genes

Lus10038599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.