Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G18310 50 / 5e-07 glycosyl hydrolase family 81 protein (.1) AT5G15870 42 / 0.0004 glycosyl hydrolase family 81 protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042526 [exp] 78 / 2e-16 AT5G15870 440 / 6e-149 glycosyl hydrolase family 81 protein (.1) Lus10021987 [exp] 78 / 3e-16 AT5G15870 949 / 0.0 glycosyl hydrolase family 81 protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G105300 [exp] 56 / 5e-09 AT5G15870 897 / 0.0 glycosyl hydrolase family 81 protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038600 pacid=23143140 polypeptide=Lus10038600 locus=Lus10038600.g ID=Lus10038600.BGIv1.0 annot-version=v1.0 ATGGTCGCCGCCCAATTCATCTCTTGCCAGGCTTCAGCCATATCAGTCACCACAGGTGTTTCGATTCCTGCGAATTGGACATTACCGTCGCTTCCAAAGG CCGTTTGGTCATTCAATTCGTCGTTACCGACAGTGACGTTATCGTCATCACCGCCACTTTACGCGTGCGGCCAAGTTTTCCAATGCAGGGATCCCTATAA GCCGGATTCATTCCTTCTCCTGGGATATGGATCATGGACTGGCTGTTTCTACCATCCGTTACACCTCACTGCCTTCTCATGTCCTGGCCTTCATTGTTTT CTCCCTTGGGGCATTCAATCCATTTGTTATAGTTCATCATTCTTTGGAGGGATCTATTGGTCTCCCCTGACACCTTTTTCCATCTCCATCGTCGTCTACT CGGGAATCCTGAGGATCGCCATACTACTCGAGGAATCCGATCCAGATTCAGAATCAATCCTCGACCGGTTTAGGTCCTGCTATCCTATCTCAGGTGACGC AGATTTCATCAAAACCAACAGTATTCAAAGGAGTGGTTCGCCCCAAGCAGAAAGATCTAGATCTCACGCTCGAAGAGATCACCGAAGCTCCTCTACCTCC CAGCTTCCTTCATCGTCTATTACCTCGTCGGAGATCCCCATCCTCGCTTTCTTGTTCAAAATAATTCTAGGCCCCTTTTCATGTCAAAATTGGTCGAATT TGGGGTCGAATACATTTTATGTAACCTAA
AA sequence Show only first row Show all	>Lus10038600 pacid=23143140 polypeptide=Lus10038600 locus=Lus10038600.g ID=Lus10038600.BGIv1.0 annot-version=v1.0 MVAAQFISCQASAISVTTGVSIPANWTLPSLPKAVWSFNSSLPTVTLSSSPPLYACGQVFQCRDPYKPDSFLLLGYGSWTGCFYHPLHLTAFSCPGLHCF LPWGIQSICYSSSFFGGIYWSPLTPFSISIVVYSGILRIAILLEESDPDSESILDRFRSCYPISGDADFIKTNSIQRSGSPQAERSRSHARRDHRSSSTS QLPSSSITSSEIPILAFLFKIILGPFSCQNWSNLGSNTFYVT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G18310			glycosyl hydrolase family 81 p...		Lus10038600 [exp]	0	1
AT4G29680			Alkaline-phosphatase-like fami...		Lus10007981 [exp]	5.7	0.8928
AT4G16730		AtTPS02	terpene synthase 02 (.1)		Lus10018390 [exp]	8.7	0.8818
AT4G02320			Plant invertase/pectin methyle...		Lus10001467 [exp]	11.1	0.8798
AT4G02300			Plant invertase/pectin methyle...		Lus10001466 [exp]	12.8	0.8735
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10007624 [exp]	14.4	0.8626
AT1G15360	AP2_ERF	WIN1, SHN1	WAX INDUCER 1, SHINE 1, Integr...		Lus10030097 [exp]	14.8	0.8727
AT1G63710		CYP86A7	"cytochrome P450, family 86, s...		Lus10032278 [exp]	16.4	0.8688
					Lus10011588 [exp]	16.4	0.7821
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Lus10004313 [exp]	16.5	0.8655
AT4G12010			Disease resistance protein (TI...		Lus10007030 [exp]	17.3	0.6158

Compare expression of checked genes

Lus10038600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.