Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G15520 595 / 0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) AT3G01480 136 / 3e-35 ATCYP38, CYP38 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037891 [exp] 631 / 0 AT3G15520 508 / 5e-180 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Lus10014534 [exp] 139 / 6e-36 AT3G01480 639 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Lus10032151 [exp] 102 / 1e-23 AT3G01480 512 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G404700 [exp] 634 / 0 AT3G15520 612 / 0.0 Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (.1) Potri.017G072800 [exp] 139 / 4e-36 AT3G01480 665 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2) Potri.001G351400 [exp] 133 / 4e-34 AT3G01480 666 / 0.0 ARABIDOPSIS CYCLOPHILIN 38, cyclophilin 38 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0475 [flax] [poplar] Cyclophil-like PF00160 [flax] [poplar] Pro_isomerase Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD
Representative CDS sequence Show only first row Show all	>Lus10038601 pacid=23143109 polypeptide=Lus10038601 locus=Lus10038601.g ID=Lus10038601.BGIv1.0 annot-version=v1.0 ATGGCTTTTCCTTCTGCACTCTCCTCCTCTTCTTCTTCCCTTTCCTTATCTGCTTCAGCTACCACCAAACATGGCATTTTCTCACCATCCTCCCGTTCTG CATTTCGCTTCTTCTACCCACCACCCATTCTCAAGGCTTGTGCCCAGTTCCGTATCCACTGCCGCAACCCTCCTCCTCCTCCAAACCCCACTTCTAAGGT CAATGTTACAAAGATTGGAAAACATTATAATCTTGCAGCAGTTGTGCAGGATACGGACAAGAGGCTTGATTTCTCAGCTTCTGAACATAGAAGCACGAAT GTAGTAGAAGGGGTCATAGCTGCTTTTCTTATGTTTGTCCAGATATCTTCACCTTTACCTTTGTTTGGGTGGGAGCTATTCTCCACTTCTCCTGCAAATG CAGTCCTTTATTCTCCAGACACTAAGGTTCCAAGGACTGGAGAACTTGCTTTGAGAAAGGCCATTCCTGCAAATCCCAACATGAAGGCCATTCAAACATC GTTGGAGGATATCTCATATCTGCTAAGGATACCACAAAGAAAGCCATACGGAACAATGGAGGGCAATGTGAAGAAAGCGCTCAAGATAGCAACAGATGAA AAGAACTCTGTTTTGACAAGTATACCCGCCGACTCCCGAGACAAGGGTTCCTCATTATATGCATCTCTAATTGATGGGAAGGGTGGTTTACAAGCTCTCC TTCAAAATATTAAGGACCAGGACCCAGATAAAGTTTCTGTTAGCCTTGCATCTTCACTTGATACCATTGCAGAGATCGAGTTGCTACAGGCTCCAGGACT TTCCTTTTTATTGCCAGCTCAATACAAGGATTACCCAAGATTGAATGGAAGAGGAATTATTGAACTTACAATTGAGAAAGGAGATGGTTCAGCATTTCCG CCTGAATCAGGTGGTGAATTAAGAAAGACAGCGAAAATTCAGGTAACGGTAGATGGATATTCAGCACCACTGACTGCAGGGAATTTTGCAAAACTGGTGG TGGATGGGGCGTATGATGGAACAAAGCTTAACTGCATTAACCAGGCAGTCATAACAGATGATGGACTTGATAAGAACAGTGGTTACAGTGTACCCCTAGA AATAATGCCGTCGGGGCAATTCGAGCCATTGTACCGAACAACATTGAGTGTCCAGGACGGTGAGTTGCCAGTTCTCCCTCTGTCAGTTTACGGAGCAGTT GCAATGGCGCATAGTGAGGTGTCTGAAGAATACTCAGCACCATATCAGTTTTTCTTCTATCTTTACGACAAGAGAAATTCTGGCTTAGGAGGATTATCAT TCGATGAAGGACAGTTTTCGGTTTTTGGATACATAACTGCTGGGAGAGACATTCTTGGGCAGATAAAAACTGGTGATGTGATTCGATCAGCAAAGCTCAT GGACGGCCAGGATCGCCTTATATTACCAAACCAGAGCTGA
AA sequence Show only first row Show all	>Lus10038601 pacid=23143109 polypeptide=Lus10038601 locus=Lus10038601.g ID=Lus10038601.BGIv1.0 annot-version=v1.0 MAFPSALSSSSSSLSLSASATTKHGIFSPSSRSAFRFFYPPPILKACAQFRIHCRNPPPPPNPTSKVNVTKIGKHYNLAAVVQDTDKRLDFSASEHRSTN VVEGVIAAFLMFVQISSPLPLFGWELFSTSPANAVLYSPDTKVPRTGELALRKAIPANPNMKAIQTSLEDISYLLRIPQRKPYGTMEGNVKKALKIATDE KNSVLTSIPADSRDKGSSLYASLIDGKGGLQALLQNIKDQDPDKVSVSLASSLDTIAEIELLQAPGLSFLLPAQYKDYPRLNGRGIIELTIEKGDGSAFP PESGGELRKTAKIQVTVDGYSAPLTAGNFAKLVVDGAYDGTKLNCINQAVITDDGLDKNSGYSVPLEIMPSGQFEPLYRTTLSVQDGELPVLPLSVYGAV AMAHSEVSEEYSAPYQFFFYLYDKRNSGLGGLSFDEGQFSVFGYITAGRDILGQIKTGDVIRSAKLMDGQDRLILPNQS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10038601 [exp]	0	1
AT1G64510			Translation elongation factor...		Lus10023054 [exp]	2.4	0.9676
AT3G15520			Cyclophilin-like peptidyl-prol...		Lus10037891 [exp]	3.5	0.9601
AT4G20760			NAD(P)-binding Rossmann-fold s...		Lus10038343 [exp]	5.9	0.9463
AT5G39530			Protein of unknown function (D...		Lus10024051 [exp]	6.2	0.9549
					Lus10037277 [exp]	7.7	0.9063
AT3G06880			Transducin/WD40 repeat-like su...		Lus10038340 [exp]	9.8	0.9274
AT2G43030			Ribosomal protein L3 family pr...		Lus10001337 [exp]	10.4	0.9457
AT1G29070			Ribosomal protein L34 (.1)		Lus10013928 [exp]	11.7	0.9470
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Lus10020805 [exp]	14.1	0.8492
AT3G14110		FLU	FLUORESCENT IN BLUE LIGHT, Tet...		Lus10015677 [exp]	14.7	0.9453

Compare expression of checked genes

Lus10038601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.