Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G15220 155 / 1e-46 Plant basic secretory protein (BSP) family protein (.1) AT2G15130 145 / 5e-43 Plant basic secretory protein (BSP) family protein (.1), Plant basic secretory protein (BSP) family protein (.2) AT2G15170 39 / 0.0006 Plant basic secretory protein (BSP) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019802 [exp] 166 / 1e-50 AT2G15220 187 / 3e-59 Plant basic secretory protein (BSP) family protein (.1) Lus10014108 [exp] 160 / 1e-45 AT3G57270 366 / 3e-123 "beta-1,3-glucanase 1", beta-1,3-glucanase 1 (.1) Lus10019799 [exp] 152 / 1e-45 AT2G15220 199 / 2e-64 Plant basic secretory protein (BSP) family protein (.1) Lus10013866 [exp] 150 / 8e-45 AT2G15220 202 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013861 [exp] 150 / 1e-44 AT2G15220 209 / 3e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026586 [exp] 150 / 1e-44 AT2G15220 204 / 8e-66 Plant basic secretory protein (BSP) family protein (.1) Lus10013869 [exp] 150 / 2e-44 AT2G15220 209 / 5e-68 Plant basic secretory protein (BSP) family protein (.1) Lus10026577 [exp] 147 / 3e-43 AT2G15220 202 / 4e-65 Plant basic secretory protein (BSP) family protein (.1) Lus10013863 [exp] 145 / 8e-43 AT2G15220 224 / 9e-74 Plant basic secretory protein (BSP) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G299500 [exp] 163 / 9e-50 AT2G15220 298 / 1e-103 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299600 [exp] 154 / 4e-46 AT2G15220 277 / 6e-95 Plant basic secretory protein (BSP) family protein (.1) Potri.001G299400 [exp] 152 / 1e-45 AT2G15220 280 / 2e-96 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094600 [exp] 150 / 5e-45 AT2G15220 288 / 3e-99 Plant basic secretory protein (BSP) family protein (.1) Potri.009G094500 [exp] 130 / 7e-37 AT2G15220 269 / 8e-92 Plant basic secretory protein (BSP) family protein (.1) Potri.005G202300 [exp] 47 / 6e-06 AT2G42900 134 / 2e-37 Plant basic secretory protein (BSP) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0126 [flax] [poplar] Peptidase_MA PF04450 [flax] [poplar] BSP Peptidase of plants and bacteria
Representative CDS sequence Show only first row Show all	>Lus10038602 pacid=23143039 polypeptide=Lus10038602 locus=Lus10038602.g ID=Lus10038602.BGIv1.0 annot-version=v1.0 ATGGCGAAGTTTCACAGCCATTCTCTCCACATCATCTTCTTACTAACATCTCTTGCCACGACGTTGACCACCGCAGTAAAATTCCACGTCATCACCGACA CCCCAAACACCCTTTCCACATTTGACCGCCGCATCGGGATGGACTTCGCCAAGCAGACCATGACAACTGCAACCAGCTTCATTTTCCAGACATTCAATCA ACGCCAGGTCACCGACCGCAAGAAACTCCAAAACGTCACCGTTTTCATCGACCAATCCTCCAACCACAGTCTTCCCTCCAACAACCGCGACAACCAATTC CGCGTCGGAGTCAACTACTTCTCCAACTTGACATCCGCCGCCGCCGCCAAGCGGGAGTTCGCCGGGATTGTTCACTACTACATGACGTACATGTGGGGGT GGAACGGGAGAGGGAAGTCTCCGGCAGGCTTGATCTCCGGGATGGCGGATTATGTGAGGTGGAAGGCTGGTTATGGACTGGATAGGAGATTTGGGGGCGA CGTCGTGGCGGGGAAGAGGTGGGACCAAGGGTACGAAGTTACGGCGAGGTTTTTGGATTATTGCGGCGGGTCGAGGTTGAGGAAGAGGAATAATGAAACG ACGTCGTTCGTGGCGGAGCTCAATGGGTTGATGAAGGAGAAGTATGACGACGGCTATTTTAAGAAGGTGATGGGGAAGAGTGTGGAGGAGCTGTGGAGTG AGTACAAACGTACTGTTGGCGATGGCAGAATTCATCCCTCTTTGATCAACCTTTGA
AA sequence Show only first row Show all	>Lus10038602 pacid=23143039 polypeptide=Lus10038602 locus=Lus10038602.g ID=Lus10038602.BGIv1.0 annot-version=v1.0 MAKFHSHSLHIIFLLTSLATTLTTAVKFHVITDTPNTLSTFDRRIGMDFAKQTMTTATSFIFQTFNQRQVTDRKKLQNVTVFIDQSSNHSLPSNNRDNQF RVGVNYFSNLTSAAAAKREFAGIVHYYMTYMWGWNGRGKSPAGLISGMADYVRWKAGYGLDRRFGGDVVAGKRWDQGYEVTARFLDYCGGSRLRKRNNET TSFVAELNGLMKEKYDDGYFKKVMGKSVEELWSEYKRTVGDGRIHPSLINL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G15220			Plant basic secretory protein ...		Lus10038602 [exp]	0	1
AT3G52155			Phosphoglycerate mutase family...		Lus10040405 [exp]	2.8	0.7398
					Lus10033498 [exp]	9.0	0.7050
AT1G12064			unknown protein		Lus10039031 [exp]	9.1	0.7082
AT1G07410		ATRAB-A2B, AtRA...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10040255 [exp]	17.1	0.7032
AT4G40060	HD	ATHB16 ,ATHB-16	homeobox protein 16 (.1)		Lus10023159 [exp]	22.5	0.6991
AT3G18990	B3	REM39, VRN1	REDUCED VERNALIZATION RESPONSE...		Lus10019652 [exp]	28.1	0.6691
AT4G39700			Heavy metal transport/detoxifi...		Lus10022508 [exp]	30.8	0.6924
AT1G65820			microsomal glutathione s-trans...		Lus10007373 [exp]	32.9	0.6481
AT1G14060			GCK domain-containing protein ...		Lus10030441 [exp]	35.0	0.6081
AT1G32360	C3HZnF		Zinc finger (CCCH-type) family...		Lus10000486 [exp]	39.8	0.6739

Compare expression of checked genes

Lus10038602 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.