Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06240 110 / 2e-26 F-box family protein (.1) AT3G07870 96 / 2e-21 F-box and associated interaction domains-containing protein (.1) AT4G12560 92 / 6e-20 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT3G16210 79 / 5e-16 F-box family protein (.1) AT3G23880 76 / 5e-15 F-box and associated interaction domains-containing protein (.1) AT5G10340 75 / 2e-14 F-box family protein (.1) AT4G22390 74 / 6e-14 F-box associated ubiquitination effector family protein (.1) AT3G10430 69 / 1e-12 F-box and associated interaction domains-containing protein (.1) AT3G17490 69 / 2e-12 F-box and associated interaction domains-containing protein (.1) AT2G17830 68 / 3e-12 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038606 [exp] 171 / 9e-49 AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) Lus10037892 [exp] 167 / 2e-47 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10013873 [exp] 130 / 1e-33 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10026587 [exp] 123 / 7e-31 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10013872 [exp] 117 / 5e-29 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10023239 [exp] 106 / 4e-25 AT3G23880 130 / 3e-34 F-box and associated interaction domains-containing protein (.1) Lus10031020 [exp] 105 / 7e-25 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10008871 [exp] 103 / 3e-24 AT4G12560 135 / 1e-35 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Lus10006403 [exp] 101 / 6e-24 AT3G07870 362 / 2e-124 F-box and associated interaction domains-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121200 [exp] 224 / 3e-69 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.006G013000 [exp] 145 / 4e-39 AT4G12560 250 / 5e-79 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006800 [exp] 139 / 5e-37 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G262900 [exp] 138 / 6e-37 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 136 / 4e-36 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006900 [exp] 132 / 2e-34 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318300 [exp] 129 / 2e-33 AT3G06240 140 / 7e-38 F-box family protein (.1) Potri.017G058000 [exp] 127 / 5e-33 AT3G06240 138 / 5e-37 F-box family protein (.1) Potri.010G207500 [exp] 126 / 3e-32 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G318400 [exp] 124 / 8e-32 AT3G06240 142 / 3e-38 F-box family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10038603 pacid=23143082 polypeptide=Lus10038603 locus=Lus10038603.g ID=Lus10038603.BGIv1.0 annot-version=v1.0 ATGAAGTCAAATGTGAAACGAGTTCTTTTCGAGTGGAGTACCCAACTACTCGGTTCACCAATTGCGAGTGCCAGAGTAATTTATCATATTCCTCGCAGTC TCCCACTGTCGCACGCTTCAGCTTTCCAGTTTCTTTCTCCCAGCGAGATCGGACCAACATATCAGAATCGCTGTAGCAAAATGTCATATCAATTACCTTG CGAAGTTTTGGCGGAGATACTCTGCAACCTACCCGTGGTGACACTGCTTCAATGCCTCTCCGTCTGCAAGTTATGGCGCTCTCTCATAAAGAGCCCAATT TTCATTTCTCTCCACCTCGCCAAAACCCTAACTTCCACCTCCGACGGCGGCAATCGTCGCCAATTGCTCTTACTCCGAACTCTATCCGACAACAAGGAAC ACTACTCTCTGCGTGTCGATGGCGGCAACAGGTTCTTTCTCTACAAGTCCTTGCACTTCCCTTTCAACCCACTCTTCTCCTTCCGGGTAGTTGGCTCTTG TAATGGCTTGGTCTGCTTATTCGATAAAAATGTTGGGGATGGATATTCAATCGTGCTCTGGAACCCTATGATCCGAAAGTCATTTGCCCTTCCGCGAACC TCCACTTCTGGATGTTATACTGTTGAGCTAATCGGGTTTGGTTACGACTCCACCTCAGACGACTTCAAGGTCTTGAGAATGGCAACAGTTCCTCGCGGAA GCATCAGCCTCAGCAGAATCACTATGGTATCTGAACTCTACTCCCTTAAATCTGGTTGCTGGAAAGACATTATAGATATAACTCCTGGGTATGAGATAGA TCAGCTTCATGTTCCTGTTTATGCAAGTAGCGCCCTTCATTGGATAGCTAGTCGAAAGCGACATCATGAAGATGAGATTAATGTTGAGTCTGAGAATATT GTTTTGGCATTTGATTTGAGAAATGAGGGATTTCGTGAGATTAAGTTGCCCAGCCGCTTGGGTAGCGTTTTGAGATCTAAGCTGTGTATTAAGGCGTTTG GAGAGTCGTCAATTGCTGTTGTTAAGCAAAAGTTTGGCTTATGGGTGATGAGGGAGTACGGAGTAGAAGAGTCTTGGGACAAGGTTTACAGTGCCTCGCT CTACAAGGCTGCTTCGCTGTTGGGATTCAGTAAGAATGGAGAAGCTTTCATTGAATCCTATAGCGGCCATATCTTGTCCGTTGAGCTAGACAGTCTGAAG TTTATGGACGTTCAAGCTCAGGGAAGTGGTAACTCCTTCATAGGTAACTACACGGAGAGTTTGGTGTTATTTGACAGAGGTAATATGGACAGCAATTAG
AA sequence Show only first row Show all	>Lus10038603 pacid=23143082 polypeptide=Lus10038603 locus=Lus10038603.g ID=Lus10038603.BGIv1.0 annot-version=v1.0 MKSNVKRVLFEWSTQLLGSPIASARVIYHIPRSLPLSHASAFQFLSPSEIGPTYQNRCSKMSYQLPCEVLAEILCNLPVVTLLQCLSVCKLWRSLIKSPI FISLHLAKTLTSTSDGGNRRQLLLLRTLSDNKEHYSLRVDGGNRFFLYKSLHFPFNPLFSFRVVGSCNGLVCLFDKNVGDGYSIVLWNPMIRKSFALPRT STSGCYTVELIGFGYDSTSDDFKVLRMATVPRGSISLSRITMVSELYSLKSGCWKDIIDITPGYEIDQLHVPVYASSALHWIASRKRHHEDEINVESENI VLAFDLRNEGFREIKLPSRLGSVLRSKLCIKAFGESSIAVVKQKFGLWVMREYGVEESWDKVYSASLYKAASLLGFSKNGEAFIESYSGHILSVELDSLK FMDVQAQGSGNSFIGNYTESLVLFDRGNMDSN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06240			F-box family protein (.1)		Lus10038603 [exp]	0	1
AT3G44850			Protein kinase superfamily pro...		Lus10005363 [exp]	1.4	0.8138
AT1G26830		CUL3A, ATCUL3A,...	cullin 3A, cullin 3 (.1)		Lus10037188 [exp]	6.5	0.7429
AT1G67340			HCP-like superfamily protein w...		Lus10037021 [exp]	8.0	0.7607
AT1G03140			splicing factor Prp18 family p...		Lus10022049 [exp]	9.8	0.7606
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10000721 [exp]	17.0	0.7051
AT5G13570		TDT, DCP2, ATDC...	TRIDENT, decapping 2 (.1.2)		Lus10040400 [exp]	17.3	0.7433
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017320 [exp]	17.4	0.7534
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10013853 [exp]	18.2	0.6623
AT2G27230	bHLH	LHW, bHLH156	LONESOME HIGHWAY, transcriptio...		Lus10013348 [exp]	19.2	0.7085
AT3G22270			Topoisomerase II-associated pr...		Lus10012099 [exp]	22.8	0.7027

Compare expression of checked genes

Lus10038603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.