Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G07870 112 / 1e-27 F-box and associated interaction domains-containing protein (.1) AT3G06240 108 / 4e-26 F-box family protein (.1) AT3G23880 87 / 8e-19 F-box and associated interaction domains-containing protein (.1) AT4G12560 87 / 9e-19 CPR1, CPR30 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) AT4G22390 82 / 8e-17 F-box associated ubiquitination effector family protein (.1) AT3G23260 77 / 2e-15 F-box and associated interaction domains-containing protein (.1) AT3G17480 76 / 4e-15 F-box and associated interaction domains-containing protein (.1) AT3G16210 74 / 2e-14 F-box family protein (.1) AT2G04920 70 / 4e-13 F-box and associated interaction domains-containing protein (.1) AT5G15660 70 / 6e-13 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037892 [exp] 718 / 0 AT3G06240 107 / 7e-26 F-box family protein (.1) Lus10029856 [exp] 176 / 8e-55 ND 40 / 6e-05 Lus10038603 [exp] 166 / 5e-47 AT3G06240 110 / 2e-26 F-box family protein (.1) Lus10026587 [exp] 152 / 5e-42 AT3G06240 104 / 3e-24 F-box family protein (.1) Lus10013873 [exp] 151 / 7e-42 AT3G06240 104 / 2e-24 F-box family protein (.1) Lus10004795 [exp] 139 / 7e-41 ND / Lus10013872 [exp] 119 / 3e-30 AT3G06240 101 / 2e-23 F-box family protein (.1) Lus10031020 [exp] 112 / 1e-27 AT3G10430 88 / 3e-19 F-box and associated interaction domains-containing protein (.1) Lus10001105 [exp] 111 / 4e-27 AT3G06240 109 / 3e-26 F-box family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G121200 [exp] 229 / 5e-72 AT4G12560 116 / 9e-29 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.001G262900 [exp] 177 / 4e-52 AT4G12560 107 / 5e-26 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.010G207500 [exp] 153 / 1e-42 AT4G12560 94 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.008G006800 [exp] 147 / 2e-40 AT4G12560 100 / 4e-23 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.017G058900 [exp] 146 / 3e-40 AT3G06240 132 / 2e-34 F-box family protein (.1) Potri.008G006900 [exp] 136 / 5e-36 AT4G12560 95 / 3e-21 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.003G145950 [exp] 128 / 2e-33 AT4G12560 113 / 7e-28 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.014G162600 [exp] 126 / 2e-32 AT3G07870 467 / 9e-164 F-box and associated interaction domains-containing protein (.1) Potri.001G035500 [exp] 125 / 5e-32 AT4G12560 271 / 3e-87 CONSTITUTIVE EXPRESSER OF PR GENES 30, CONSTITUTIVE EXPRESSER OF PR GENES 1, F-box and associated interaction domains-containing protein (.1.2) Potri.002G223000 [exp] 124 / 7e-32 AT3G07870 467 / 5e-164 F-box and associated interaction domains-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0162 [flax] [poplar] FBA PF07734 [flax] [poplar] FBA_1 F-box associated CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10038606 pacid=23143112 polypeptide=Lus10038606 locus=Lus10038606.g ID=Lus10038606.BGIv1.0 annot-version=v1.0 ATGCCAGCAGACTATCTCCCACAGGAAATCCTGGTGGACATCTTCCACAGGCTCCCAATCAAATCCATAGGTTCCTGCATCTGCGTCTCCAAGTACTGGC TATCCGTCATCAAAACCCCCGATTTCGTCACCGACCATTTCAACATCCAACAAACAAGGCCACGTCATCATCCCCTGTTCCTCGTCCGGCTCTGTTCCGG CCCTGCTCTCAACATCCACCACTCTCTTCGCTACGACGACTATTACTTCACCCGCTACTCCAAAGTCAGACTCCCTTTCGAATTCAACAACCACTCCTTC TCCGTTGTCGGCTCCTGCCGCGGATTGGTCTGCCTCATGCATAATCTCTACACCTACGACTACACCATCGCTCTCTGGAACCCATCCATCGGCAAGACCT TCAATCTCCCTTTACCCGGCGTCACTTTCGATACCCACGGCGCTTTCGAAGCTCTTCTAGGGTTCGGATTTGATTCCTCCGCCCAGGATTACAAAGTAGT GAGAGTCTTGCGGCTCCTCGAGAGAGACGATGTTGAAATCGAAGTTGAAGTTTTCTCCTTCAACGCCCGATCATGGAAGAGGATTATTACTCCCAGAGCG CCGCAGTACAGCATCGCGGAGCGCGGGTCTCAAGCTTTCGTCAACGGGTCGGTCCACTGGGTCGCGACGACCCGAGGGGAAGGTAGCGGCAGCAGAGATA AGAGCTTGATCGTGGGGTTCCGATTGGGAGACGAGCGGTTCAGGGAGCTGGAACTGCCGGGGAGCTTGGAAATGGAGAGTCCGATTTTCTTGACGGTGAG TCCGTACAAGGAATCGACGATTGCGGTGTTTAGGAGGAACTACTTGACCCGATCGGATAATGAAATATGGGTGATGTCGGAGTACGGGCGGGTGGGTTCG TGGGTGAGATTGTTGACCGTGGGGATGTACTTGAACGGGGTGCCGAGGGCGCTGGGATTCAGAGGAAACGGAGACGTTTGTTTTGAACTTTCAGGCGGGG AAATAGTGTCGGGTGACCCGGAGAGTTTCGAGGTTCGAGAACTTGGATTGCAGGGAGAAGTTGGGTATTCGGTTCTGAGCAGCTTCCAGGAGACCTTAGC TTTGCTTGATACATCCAGTGCCTGTTGCGACTATATTTAG
AA sequence Show only first row Show all	>Lus10038606 pacid=23143112 polypeptide=Lus10038606 locus=Lus10038606.g ID=Lus10038606.BGIv1.0 annot-version=v1.0 MPADYLPQEILVDIFHRLPIKSIGSCICVSKYWLSVIKTPDFVTDHFNIQQTRPRHHPLFLVRLCSGPALNIHHSLRYDDYYFTRYSKVRLPFEFNNHSF SVVGSCRGLVCLMHNLYTYDYTIALWNPSIGKTFNLPLPGVTFDTHGAFEALLGFGFDSSAQDYKVVRVLRLLERDDVEIEVEVFSFNARSWKRIITPRA PQYSIAERGSQAFVNGSVHWVATTRGEGSGSRDKSLIVGFRLGDERFRELELPGSLEMESPIFLTVSPYKESTIAVFRRNYLTRSDNEIWVMSEYGRVGS WVRLLTVGMYLNGVPRALGFRGNGDVCFELSGGEIVSGDPESFEVRELGLQGEVGYSVLSSFQETLALLDTSSACCDYI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G07870			F-box and associated interacti...		Lus10038606 [exp]	0	1
AT4G10390			Protein kinase superfamily pro...		Lus10013656 [exp]	1.4	0.9377
AT1G59710			Protein of unknown function (D...		Lus10036694 [exp]	1.7	0.9276
AT1G47750		PEX11A	peroxin 11A (.1)		Lus10029260 [exp]	2.2	0.9253
AT3G03280			unknown protein		Lus10013490 [exp]	2.8	0.9403
					Lus10023370 [exp]	5.7	0.9112
AT5G17850			Sodium/calcium exchanger famil...		Lus10005673 [exp]	6.5	0.9172
AT5G23100			Protein of unknown function, D...		Lus10009615 [exp]	7.3	0.9095
AT5G17850			Sodium/calcium exchanger famil...		Lus10020318 [exp]	8.9	0.9087
AT1G29290			unknown protein		Lus10007309 [exp]	9.2	0.9215
AT3G03280			unknown protein		Lus10007960 [exp]	9.2	0.9272

Compare expression of checked genes

Lus10038606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.