Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10340 95 / 2e-21 Ankyrin repeat family protein (.1.2) AT2G24600 93 / 1e-20 Ankyrin repeat family protein (.1.2.3.4) AT5G54710 84 / 2e-17 Ankyrin repeat family protein (.1) AT5G50140 74 / 2e-14 Ankyrin repeat family protein (.1) AT1G34050 73 / 4e-14 Ankyrin repeat family protein (.1) AT5G54700 69 / 9e-13 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037894 [exp] 432 / 2e-148 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 107 / 2e-25 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10024845 [exp] 100 / 1e-24 AT2G24600 193 / 5e-58 Ankyrin repeat family protein (.1.2.3.4) Lus10018757 [exp] 102 / 1e-23 AT1G34050 298 / 3e-93 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042200 [exp] 219 / 1e-66 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.001G187600 [exp] 93 / 1e-20 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.010G212700 [exp] 45 / 5e-05 AT3G12360 858 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038608 pacid=23143117 polypeptide=Lus10038608 locus=Lus10038608.g ID=Lus10038608.BGIv1.0 annot-version=v1.0 ATGGTGATCTACCTCCTGAAGGTAGGCATAGAAGTTAACGCAATCAATCAAAAGGGCCAAACTGCTCTGGACGTGGTGGAGTCAGATTCTAGCAATTCCG GCCCACTTCTCATATTACCAGCACTACTTGACGCCGGCGCCAAGAAGTGCTCCCAGCTGCCACCAACCTCCTCCGGGGAGATCCTTCACCACCACCACCA GGAAATGTTATTTATGAATAGCCCGTCCATACATTCCACACTCCTTTCACCTCCACCAAGTAAACAAGTTTCAAAATCTCCGCACCATCAGCACGACAGC CACCACCGTCCTCGTGGTGGTAGCCACCGTAGACGCAGGGAGAAACAACTGGAGATCCAAAACGAGGGCCTTCGAAACGCTCGAAACACCATCGCGGTGG TGGCCGTTCTTATAGCCACGGTGACGTTTGCAGCCGGCATAAACCCACCGGGGGGTTTGAACCAGCAGAGTGGGAAGGCAATCTTGGGACACCAGGCTTC GTTTAAGGTGTTTATGGTGTGCAACATTCTTGCTCTGTTTCTGTCACTAGGGGTGGTCATAGTTCTGGTAAGCATCATACCTTTCCGTCGGAAACCAATG ATGAAGATCTTGGCATTGGCCCACAAAGTGATGTGGGTTTCGGCGTTGTTCATGGCGGCCGCCTACTTGGCGGCGGTGTGGACAGTTTTGCCCCACCATG AGGCGGCGTGGGTGGTTGGCATCGGCGGAGGATCCACCGCTTTGATATTTGTTGGGTTGAGTGTTTTGCTTGTGAAGCATTGGATGAGGAAGAGAGAATA CTATTGGATGAGGAGGAAAAATGATGAGATGATGATGACGAAGAAGAGGGGAATTAATGGTAATCTTCATCATAATGTGAGCAGCAGCCCAAATGGTAGC GGAGTTAGTGGACTTGAAGAGTTGAAGGCTATGAAGAAAGGTGGACGTTACTCCAGTAGTAGTAATTCTGATGTTGGTAGCTCTGAAAAGGAAGGTTATC ACTTGTACTAG
AA sequence Show only first row Show all	>Lus10038608 pacid=23143117 polypeptide=Lus10038608 locus=Lus10038608.g ID=Lus10038608.BGIv1.0 annot-version=v1.0 MVIYLLKVGIEVNAINQKGQTALDVVESDSSNSGPLLILPALLDAGAKKCSQLPPTSSGEILHHHHQEMLFMNSPSIHSTLLSPPPSKQVSKSPHHQHDS HHRPRGGSHRRRREKQLEIQNEGLRNARNTIAVVAVLIATVTFAAGINPPGGLNQQSGKAILGHQASFKVFMVCNILALFLSLGVVIVLVSIIPFRRKPM MKILALAHKVMWVSALFMAAAYLAAVWTVLPHHEAAWVVGIGGGSTALIFVGLSVLLVKHWMRKREYYWMRRKNDEMMMTKKRGINGNLHHNVSSSPNGS GVSGLEELKAMKKGGRYSSSSNSDVGSSEKEGYHLY

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	0	1
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029946 [exp]	2.4	0.9182
AT1G10340			Ankyrin repeat family protein ...		Lus10038609 [exp]	2.6	0.9156
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	3.0	0.9111
AT5G45890		SAG12	senescence-associated gene 12 ...		Lus10015286 [exp]	3.5	0.9349
AT3G54420		ATCHITIV, CHIV,...	CHITINASE CLASS IV, homolog of...		Lus10010864 [exp]	4.7	0.9329
AT5G10760			Eukaryotic aspartyl protease f...		Lus10026905 [exp]	5.2	0.9320
AT5G47230	AP2_ERF	ATERF5, ATERF-5...	ETHYLENE RESPONSIVE ELEMENT BI...		Lus10004369 [exp]	5.7	0.9228
AT5G62350			Plant invertase/pectin methyle...		Lus10031713 [exp]	6.9	0.8519
AT1G24140			Matrixin family protein (.1)		Lus10035221 [exp]	7.1	0.9215
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	11.6	0.8940

Compare expression of checked genes

Lus10038608 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.