Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10340 143 / 9e-39 Ankyrin repeat family protein (.1.2) AT2G24600 126 / 1e-32 Ankyrin repeat family protein (.1.2.3.4) AT1G34050 122 / 5e-31 Ankyrin repeat family protein (.1) AT5G60070 110 / 7e-27 ankyrin repeat family protein (.1) AT5G02620 109 / 9e-27 ATANK1, ANK1 ankyrin-like1 (.1) AT3G09550 107 / 8e-26 Ankyrin repeat family protein (.1) AT5G54710 106 / 1e-25 Ankyrin repeat family protein (.1) AT2G31820 102 / 4e-24 Ankyrin repeat family protein (.1) AT1G03670 101 / 8e-24 ankyrin repeat family protein (.1) AT5G54620 100 / 1e-23 Ankyrin repeat family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037894 [exp] 579 / 0 AT1G10340 298 / 3e-93 Ankyrin repeat family protein (.1.2) Lus10024844 [exp] 211 / 4e-63 AT1G34050 353 / 4e-114 Ankyrin repeat family protein (.1) Lus10041537 [exp] 128 / 1e-33 AT5G51160 350 / 2e-117 Ankyrin repeat family protein (.1) Lus10018757 [exp] 114 / 3e-28 AT1G34050 298 / 3e-93 Ankyrin repeat family protein (.1) Lus10003986 [exp] 113 / 9e-28 AT3G09550 831 / 0.0 Ankyrin repeat family protein (.1) Lus10015037 [exp] 112 / 1e-27 AT3G09550 849 / 0.0 Ankyrin repeat family protein (.1) Lus10015224 [exp] 108 / 2e-26 AT1G07710 727 / 0.0 Ankyrin repeat family protein (.1) Lus10003308 [exp] 108 / 4e-26 AT3G12360 981 / 0.0 INCREASED TOLERANCE TO NACL, Ankyrin repeat family protein (.1) Lus10005432 [exp] 107 / 5e-26 AT1G07710 720 / 0.0 Ankyrin repeat family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042200 [exp] 357 / 4e-120 AT1G10340 268 / 6e-82 Ankyrin repeat family protein (.1.2) Potri.001G187600 [exp] 218 / 5e-66 AT5G50140 280 / 3e-86 Ankyrin repeat family protein (.1) Potri.014G051100 [exp] 145 / 5e-40 AT5G51160 209 / 3e-62 Ankyrin repeat family protein (.1) Potri.015G111300 [exp] 135 / 1e-36 AT5G51160 338 / 2e-112 Ankyrin repeat family protein (.1) Potri.012G113800 [exp] 130 / 2e-34 AT5G51160 351 / 1e-117 Ankyrin repeat family protein (.1) Potri.006G223800 [exp] 129 / 5e-34 AT5G51160 176 / 1e-49 Ankyrin repeat family protein (.1) Potri.011G133700 [exp] 122 / 6e-32 AT1G03670 185 / 8e-53 ankyrin repeat family protein (.1) Potri.011G133300 [exp] 124 / 8e-32 AT1G03670 250 / 6e-75 ankyrin repeat family protein (.1) Potri.013G017254 [exp] 122 / 1e-31 AT5G51160 151 / 7e-41 Ankyrin repeat family protein (.1) Potri.011G133400 [exp] 122 / 3e-31 AT4G03500 251 / 3e-75 Ankyrin repeat family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0465 [flax] [poplar] Ank PF00023 [flax] [poplar] Ank Ankyrin repeat
Representative CDS sequence Show only first row Show all	>Lus10038609 pacid=23142999 polypeptide=Lus10038609 locus=Lus10038609.g ID=Lus10038609.BGIv1.0 annot-version=v1.0 ATGGAGATCAGTCGGCAGGGGGTTTATGAAACCGTGGTGAGGGGGGATGTGGCGGCCTTTGTGGCCCTGGTTGATCAGCAGGAGGAGCAAGCCGAGAATA TTGTGGAAGTGTTGATAACGAAGCAGATGGTGCTGCACCTAGCTGCTCGGCTGGGACACGTGGATCTGGTGAAGGAGCTGGTGAAGCGGGTGCCGAGTGG GGTGTCGGCGTTGAACGAGAAGGAGGAGACTCCGTTGCATGAGGCATGCAGGGAAGGGTGGGTAGACGTGGCGAGGTTGATGGTTGAGATGGATCCTTGG GTGGTGTGTAAGCTCAACGATGACAAGGAGAGTGCGTTGTTGGTGGCGGCCAAGAGGGGGAAGTTAGAGGTGGTGAGTTATCTCTTGTCCGAGTCGCAGT GGATTTTGTTGATGATGGAGGTTGACGCACCCACCACTTCTCTTCATGCCGCTGCTTCCGGTGGTCATACTGAGATTGTGAAGGAGATATTGAAAGTACG TCCCGACTTCGCATGGAAAAGAGAAAGTAGTAGACAAGGATGTACCCCTCTCCACCAAGCTTGTACGAAAGGCCATCTCAACGTAGCTAGGGAGCTCCTC AAGTTGGACGCCGACCTGGCTTCCGTACAAGACAACGACGGCCGGACTCCGCTCCATTACGCCGCTATGAAAGGTCGGGTCAATATCATGGACGAGATAC TTTGCTACAGTCTGGATTCTGCCCACACCATCACCACACGCGGCGAGACCGTGCTTCATATGAGCGTCAAGAACAACCAATTCGAAGCTGTCAAGTACCT CATTGAGAAACTCAATACCGCCATGCTCCTCAACCGACCAGATCACGACGGCAATACCATTCTGCATCTCGCCACCGCCGGAAAGCTTAGCACTATAATT GCTATATACAATTAA
AA sequence Show only first row Show all	>Lus10038609 pacid=23142999 polypeptide=Lus10038609 locus=Lus10038609.g ID=Lus10038609.BGIv1.0 annot-version=v1.0 MEISRQGVYETVVRGDVAAFVALVDQQEEQAENIVEVLITKQMVLHLAARLGHVDLVKELVKRVPSGVSALNEKEETPLHEACREGWVDVARLMVEMDPW VVCKLNDDKESALLVAAKRGKLEVVSYLLSESQWILLMMEVDAPTTSLHAAASGGHTEIVKEILKVRPDFAWKRESSRQGCTPLHQACTKGHLNVARELL KLDADLASVQDNDGRTPLHYAAMKGRVNIMDEILCYSLDSAHTITTRGETVLHMSVKNNQFEAVKYLIEKLNTAMLLNRPDHDGNTILHLATAGKLSTII AIYN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G10340			Ankyrin repeat family protein ...		Lus10038609 [exp]	0	1
AT2G36430			Plant protein of unknown funct...		Lus10027719 [exp]	2.4	0.8751
AT1G10340			Ankyrin repeat family protein ...		Lus10038608 [exp]	2.6	0.9156
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Lus10022415 [exp]	3.3	0.8471
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020491 [exp]	5.0	0.8710
AT5G26340		ATSTP13, MSS1, ...	SUGAR TRANSPORT PROTEIN 13, Ma...		Lus10041210 [exp]	5.1	0.8888
AT5G48380		BIR1	BAK1-interacting receptor-like...		Lus10037226 [exp]	5.9	0.8660
AT3G51550		FER	FERONIA, Malectin/receptor-lik...		Lus10029946 [exp]	6.0	0.8684
AT2G14610		PR-1, PR1, ATPR...	pathogenesis-related gene 1 (....		Lus10020492 [exp]	6.9	0.8580
AT2G32830		PHT1;5, PHT5	PHOSPHATE TRANSPORTER 5, phosp...		Lus10022547 [exp]	9.0	0.8553
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Lus10018379 [exp]	9.6	0.8725

Compare expression of checked genes

Lus10038609 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.