Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67280 454 / 2e-160 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) AT1G11840 379 / 1e-131 ATGLX1 glyoxalase I homolog (.1.2.3.4.5.6) AT1G08110 64 / 8e-12 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043235 [exp] 452 / 6e-160 AT1G67280 551 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10011115 [exp] 444 / 2e-156 AT1G67280 543 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Lus10003523 [exp] 377 / 2e-127 AT1G11840 495 / 5e-174 glyoxalase I homolog (.1.2.3.4.5.6) Lus10002943 [exp] 335 / 7e-115 AT1G11840 447 / 5e-160 glyoxalase I homolog (.1.2.3.4.5.6) Lus10000007 [exp] 119 / 4e-33 AT1G11840 131 / 1e-39 glyoxalase I homolog (.1.2.3.4.5.6) Lus10021429 [exp] 66 / 2e-12 AT1G08110 297 / 3e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4) Lus10016138 [exp] 66 / 4e-12 AT1G08110 302 / 2e-104 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G042100 [exp] 469 / 2e-166 AT1G67280 488 / 3e-174 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.018G084800 [exp] 459 / 1e-162 AT1G67280 553 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.006G160600 [exp] 456 / 2e-161 AT1G67280 571 / 0.0 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.004G013200 [exp] 383 / 2e-133 AT1G11840 496 / 8e-179 glyoxalase I homolog (.1.2.3.4.5.6) Potri.006G239802 [exp] 88 / 1e-21 AT1G67280 90 / 7e-13 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily protein (.1.2) Potri.009G007200 [exp] 67 / 8e-13 AT1G08110 318 / 6e-111 lactoylglutathione lyase family protein / glyoxalase I family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0104 [flax] [poplar] Glyoxalase PF00903 [flax] [poplar] Glyoxalase Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
Representative CDS sequence Show only first row Show all	>Lus10038612 pacid=23143012 polypeptide=Lus10038612 locus=Lus10038612.g ID=Lus10038612.BGIv1.0 annot-version=v1.0 ATGTACGGAGCACAGTCAATGCCGTTGTCTTTAACATCTTCTTCCTACTCCAACAAAATGCCGTTTCTCCGCCGCCGTCGTTCCTTGAAGCCTTGCTCAT GCTCACCCTCTTCTTGCATGTCCAATGATGCCGGCGGTAATGCCAGTCTTTCCCGCCGACTCGCTCTCTTCCAAATTAGCCTCGCGATTCCCCAGTCATA CCTTTTGGGGTTAAGAGAAGGTAGTTCATTGAGCCCTGGGATTGATACAATGGGAACTGGGTCTCCAGTGAAAAAGGCATTGGCAGAAACAGCTGACTTG TTGGATTGGATAAAGAAGGACAAAAGAAGAATGCTTCATGTTGTTTACTATGTTGGTGACTTGGACAAGACGATAAAATTTTATACCGAGTGCTTAGGGA TGAAGCTATTGAGGCAACGTGACATACCTGAAGACAAATACAGAAATGCTTTTCTTGGATACGGACCCGAGGAATCAAATTTCGCTGTTGAGCTTACCTA CAATTATGGAGTTGACAAGTATGAAATTGGATCCGGTTTTGGTCATTTTGGTGTTGCCGTGGAAGATGTTGCGAAGGCTGTGAGTCTTGCCAATGCAAAA GGTGGGAGAATTACCAACGGGGGAAGTACAAAATTTGCTTTTCTTGAAGACCCTGATGGGTACAACTTCGAGCTTTTGGAAAGAAAGCCTGCACCAGAAC CCTTGTGCCAAGTGATGCTTAGAGTTGGTGATTTGGATCGAGCCATTGACTTTTATAAGAAGGCTTTTGGAATGGATCTTCTACGTAAACAAGACAATGC CAAGGAGAAGTCTACAGTTGCGTTCATGGGTTATGGTCCTGAAGCCAAGAATGTTGTGCTAGAACTGACCTATAACTATGGTATTAGCACTTATGAGAAA GGAAATGGTTATCAGCAGATTGCAATAGGGACAGATGATGTTTATAAGAGTGCTGAAGCAATCAAACAATGTGGTGGTGTCATTGTTCGAGAACCTGGGC CCTTGCCAGGTATTAACACGAAGATTACTGTCTGCTTGGATCCAGATGGTTGGAAATGGGTATTTGTTGATAATGCTGATTTCCTCAGAGAACTGGAGTG A
AA sequence Show only first row Show all	>Lus10038612 pacid=23143012 polypeptide=Lus10038612 locus=Lus10038612.g ID=Lus10038612.BGIv1.0 annot-version=v1.0 MYGAQSMPLSLTSSSYSNKMPFLRRRRSLKPCSCSPSSCMSNDAGGNASLSRRLALFQISLAIPQSYLLGLREGSSLSPGIDTMGTGSPVKKALAETADL LDWIKKDKRRMLHVVYYVGDLDKTIKFYTECLGMKLLRQRDIPEDKYRNAFLGYGPEESNFAVELTYNYGVDKYEIGSGFGHFGVAVEDVAKAVSLANAK GGRITNGGSTKFAFLEDPDGYNFELLERKPAPEPLCQVMLRVGDLDRAIDFYKKAFGMDLLRKQDNAKEKSTVAFMGYGPEAKNVVLELTYNYGISTYEK GNGYQQIAIGTDDVYKSAEAIKQCGGVIVREPGPLPGINTKITVCLDPDGWKWVFVDNADFLRELE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67280			Glyoxalase/Bleomycin resistanc...		Lus10038612 [exp]	0	1
AT1G70200			RNA-binding (RRM/RBD/RNP motif...		Lus10029195 [exp]	1.0	0.9594
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10011108 [exp]	4.5	0.9404
AT1G51080			unknown protein		Lus10034834 [exp]	5.3	0.9212
AT3G54820		PIP2D, PIP2;5	PLASMA MEMBRANE INTRINSIC PROT...		Lus10023515 [exp]	5.9	0.9356
AT3G01480		ATCYP38, CYP38	ARABIDOPSIS CYCLOPHILIN 38, cy...		Lus10014534 [exp]	6.2	0.9389
AT1G12740		CYP87A2	"cytochrome P450, family 87, s...		Lus10029100 [exp]	6.3	0.9162
AT1G12570			Glucose-methanol-choline (GMC)...		Lus10024487 [exp]	8.1	0.9152
AT4G29060		EMB2726	embryo defective 2726, elongat...		Lus10043229 [exp]	8.2	0.9362
AT3G18390		EMB1865	embryo defective 1865, CRS1 / ...		Lus10009031 [exp]	8.8	0.9310
AT4G31850		PGR3	proton gradient regulation 3 (...		Lus10003424 [exp]	8.8	0.9352

Compare expression of checked genes

Lus10038612 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.