Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038613 pacid=23143131 polypeptide=Lus10038613 locus=Lus10038613.g ID=Lus10038613.BGIv1.0 annot-version=v1.0 ATGAGTATAGGAGCAATAGTTGTGGCATTGTGGCTTGTTCGCAGTTGCCACCGGACTGAATACATGGTTGAGGCCTGGCTTCTGGTATTTCAGCTGTTAG GCATAACAAAAGGGTTCCCTGTATCTCAAGCTACTATGGAAGAGTTTTTTACCGGGATGGAAGCAATGGAACCGAAAGCAATCATCCTGAATCAACTTTC ATATGAATCCGCCAGAAAGGCAGCAACCACGGGTGCAAAATTCAAAGCAGCAATCCAGATGAATATTAAGTTAGCACCATCAGAGTTGTTCATGCCATAT TCTGTAGTTAGGTACAACATCATGTTCATCGGCAGCCCATAA
AA sequence Show only first row Show all	>Lus10038613 pacid=23143131 polypeptide=Lus10038613 locus=Lus10038613.g ID=Lus10038613.BGIv1.0 annot-version=v1.0 MSIGAIVVALWLVRSCHRTEYMVEAWLLVFQLLGITKGFPVSQATMEEFFTGMEAMEPKAIILNQLSYESARKAATTGAKFKAAIQMNIKLAPSELFMPY SVVRYNIMFIGSP

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038613 [exp]	0	1
AT5G65550			UDP-Glycosyltransferase superf...		Lus10043445 [exp]	2.4	0.8786
AT4G19380			Long-chain fatty alcohol dehyd...		Lus10037257 [exp]	3.7	0.8625
AT5G46090			Protein of unknown function (D...		Lus10013933 [exp]	4.4	0.8995
AT1G03220			Eukaryotic aspartyl protease f...		Lus10041225 [exp]	9.4	0.8071
AT2G38080		ATLMCO4, IRX12,...	LACCASE 4, IRREGULAR XYLEM 12,...		Lus10040226 [exp]	9.6	0.8688
AT2G40190		LEW3	LEAF WILTING 3, UDP-Glycosyltr...		Lus10021233 [exp]	9.9	0.8714
					Lus10026392 [exp]	13.2	0.7881
AT5G18310			unknown protein		Lus10042520 [exp]	13.5	0.8248
AT1G26690			emp24/gp25L/p24 family/GOLD fa...		Lus10026625 [exp]	13.6	0.8399
					Lus10034979 [exp]	16.7	0.8679

Compare expression of checked genes

Lus10038613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.