Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 96 / 3e-23 Major facilitator superfamily protein (.1) AT3G16180 92 / 6e-22 Major facilitator superfamily protein (.1) AT1G72140 70 / 4e-14 Major facilitator superfamily protein (.1) AT1G22540 69 / 7e-14 Major facilitator superfamily protein (.1) AT1G22550 67 / 2e-13 Major facilitator superfamily protein (.1) AT1G72120 66 / 6e-13 Major facilitator superfamily protein (.1) AT1G69870 65 / 2e-12 NRT1.7 nitrate transporter 1.7 (.1) AT3G54450 65 / 2e-12 Major facilitator superfamily protein (.1) AT1G68570 64 / 5e-12 Major facilitator superfamily protein (.1) AT1G22570 62 / 1e-11 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025802 [exp] 106 / 8e-27 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 103 / 6e-26 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10038615 [exp] 84 / 1e-19 AT1G27080 146 / 8e-40 nitrate transporter 1.6 (.1) Lus10023663 [exp] 85 / 2e-19 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10009505 [exp] 74 / 2e-16 AT1G52190 208 / 8e-64 Major facilitator superfamily protein (.1) Lus10016932 [exp] 67 / 4e-13 AT1G22540 673 / 0.0 Major facilitator superfamily protein (.1) Lus10034936 [exp] 66 / 4e-13 AT3G16180 175 / 2e-51 Major facilitator superfamily protein (.1) Lus10005417 [exp] 65 / 2e-12 AT1G69850 446 / 1e-150 nitrate transporter 1:2 (.1) Lus10040099 [exp] 64 / 5e-12 AT2G02040 883 / 0.0 NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041600 [exp] 108 / 7e-28 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 108 / 1e-27 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 107 / 2e-27 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 107 / 2e-27 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 102 / 2e-25 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 102 / 3e-25 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 94 / 1e-22 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 89 / 1e-20 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 84 / 7e-19 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.013G106600 [exp] 72 / 4e-15 AT1G22540 666 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038614 pacid=23143059 polypeptide=Lus10038614 locus=Lus10038614.g ID=Lus10038614.BGIv1.0 annot-version=v1.0 ATGATACTTTCTGCTCTCTCTTTCTTCTCGGCTTCTCCATTTTATGCGAAGCAAGATGCCAAAGCAAGCTTGATCACTGCGCTTTCTCGAGTTCCTATAG CTGCATTTAGAAACAGAGGAATCAAATTTCGTTCTAAATCGATTAAACAAGTCTATCATCATTCAGAGTCTGATAAAATGCATTTGGAGCCAAGTGACAA CTTGAGGATTCCAAATTCCAGCAGCCTCATTCACCCTATTCATTACGATAACCCTGTTGATCTGGGTACCCCTCTATGTGTCATCATTCCTGTAGCTTCC AAACTCAAAGGGAAACCTGCTAGATTTCCGGTGAAGCAAAGGTTGGGGCTTGGAATCCTTGTCAGTTCAGTATCAATGGCAGCACTAGGCACGGTCGAGA GGATTCGACGCGAAAGGGCTATCAGTGAGGGGCTGTTAGATAATCCTACTGCTATTGTAGATATGTCTGCCATGTGGTTCTTGATGTACTACATCCCATT TGGAGTAGCAGAGGCGTTTAATTACGTAGCGCAGAGTGAGTTTTATTACAGTTAG
AA sequence Show only first row Show all	>Lus10038614 pacid=23143059 polypeptide=Lus10038614 locus=Lus10038614.g ID=Lus10038614.BGIv1.0 annot-version=v1.0 MILSALSFFSASPFYAKQDAKASLITALSRVPIAAFRNRGIKFRSKSIKQVYHHSESDKMHLEPSDNLRIPNSSSLIHPIHYDNPVDLGTPLCVIIPVAS KLKGKPARFPVKQRLGLGILVSSVSMAALGTVERIRRERAISEGLLDNPTAIVDMSAMWFLMYYIPFGVAEAFNYVAQSEFYYS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	0	1
AT2G46770	NAC	NST1, ANAC043, ...	NAC SECONDARY WALL THICKENING...		Lus10002687 [exp]	2.0	0.9628
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010106 [exp]	6.0	0.9206
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	6.8	0.9520
AT4G14760			kinase interacting (KIP1-like)...		Lus10021908 [exp]	8.8	0.9480
AT1G27080		NRT1.6	nitrate transporter 1.6 (.1)		Lus10038615 [exp]	11.0	0.8902
AT1G71320			F-box family protein (.1)		Lus10038210 [exp]	11.0	0.9425
AT5G20630		ATGER3, GLP3A, ...	GERMIN-LIKE PROTEIN 3, ARABIDO...		Lus10037664 [exp]	12.2	0.9299
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10015265 [exp]	14.6	0.9444
AT1G03010			Phototropic-responsive NPH3 fa...		Lus10029443 [exp]	15.4	0.9212
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010107 [exp]	15.7	0.9203

Compare expression of checked genes

Lus10038614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.