Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 122 / 2e-31 Major facilitator superfamily protein (.1) AT3G16180 120 / 1e-30 Major facilitator superfamily protein (.1) AT5G11570 110 / 2e-27 Major facilitator superfamily protein (.1) AT1G69860 93 / 4e-21 Major facilitator superfamily protein (.1) AT1G69870 87 / 7e-19 NRT1.7 nitrate transporter 1.7 (.1) AT3G21670 86 / 7e-19 Major facilitator superfamily protein (.1) AT1G18880 85 / 2e-18 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G27080 79 / 2e-16 NRT1.6 nitrate transporter 1.6 (.1) AT1G62200 79 / 3e-16 AtPTR6 peptide transporter 6, Major facilitator superfamily protein (.1) AT5G62680 74 / 8e-15 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009505 [exp] 170 / 4e-52 AT1G52190 208 / 8e-64 Major facilitator superfamily protein (.1) Lus10025802 [exp] 109 / 8e-27 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10035860 [exp] 108 / 2e-26 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 105 / 2e-25 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10034936 [exp] 100 / 2e-25 AT3G16180 175 / 2e-51 Major facilitator superfamily protein (.1) Lus10038616 [exp] 100 / 2e-23 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10038618 [exp] 97 / 3e-22 AT1G52190 377 / 5e-124 Major facilitator superfamily protein (.1) Lus10037896 [exp] 95 / 1e-21 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038613 [exp] 83 / 1e-19 ND 59 / 3e-17
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G041800 [exp] 131 / 1e-34 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 125 / 1e-32 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 124 / 6e-32 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 123 / 1e-31 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 123 / 1e-31 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 123 / 1e-31 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 119 / 3e-30 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 117 / 2e-29 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 103 / 7e-25 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.006G240000 [exp] 96 / 4e-22 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038615 pacid=23142993 polypeptide=Lus10038615 locus=Lus10038615.g ID=Lus10038615.BGIv1.0 annot-version=v1.0 ATGGATCCAGACAAGAGAAATCCGCACAACGACAATCCCGCAGGCGTCACGGAGCCACTTCTCAGTATCCAAAACCCAAAGGGAGGCTTCAGAACCTTGC CCTCCACCATTGGAACAGAGGCGTTCGAGAAGGTGGCGACACTGGGTCTGATGCCTAACATGATACTGTACTTGACGAGAGAGTATGGTATGGGAAACAT TGAAGGAGCTAACATACTCTTCATTTGGTCGGCTGCAAGTAACTTCACACCCGTTCTCGGAGCATTCCTTGCCGATTCTTATGTGGGTCGCTTTCGCATG ATCGCATTCGGCTCCATCTTCAGCCTTGTGGTCCTGATCCCAATCGTATCCAAGATTCGGGGCAAACCTTCCTGCCTCACCAGCAAACAGCGAATGGGAA TCGAAATCCTCTTATCCTCCCTCTCCATGGCGGCTCTCGCTGTTGTTGAGGCCCTCCGGCGACGACTCGTGATTCGTGGTCTGGAATGGTTGTCGGCGAT GTGGATGATGCAACATCTCGTTCTGTTAGGAGTGGCGGAGGGGCTGAACGGCACTGCACAGAGCGAGTTTTACTACACGGAGTTTCCGGAGAGCATGAGA AGCATCTCGACGACGCTGTGGGGGATGGCGATGTCGGGGGCGTGCTTGGCGTCGAGTTTGATAATGAGCGCCGTCGATGAGATTACGAGCTGGACTGGTA GCGATATCAACAAGGGACATTACGATTATTATTACTGGCTTCTTGCGTCGATCAGCTTTGCCAATTTCATGTATTATTGGGCGGGCCTGTTCGGAGGCCT ATGGGCCTTGCCTTGGGAGAGGGAAACAAGCCCAAGTTGTTGCTGA
AA sequence Show only first row Show all	>Lus10038615 pacid=23142993 polypeptide=Lus10038615 locus=Lus10038615.g ID=Lus10038615.BGIv1.0 annot-version=v1.0 MDPDKRNPHNDNPAGVTEPLLSIQNPKGGFRTLPSTIGTEAFEKVATLGLMPNMILYLTREYGMGNIEGANILFIWSAASNFTPVLGAFLADSYVGRFRM IAFGSIFSLVVLIPIVSKIRGKPSCLTSKQRMGIEILLSSLSMAALAVVEALRRRLVIRGLEWLSAMWMMQHLVLLGVAEGLNGTAQSEFYYTEFPESMR SISTTLWGMAMSGACLASSLIMSAVDEITSWTGSDINKGHYDYYYWLLASISFANFMYYWAGLFGGLWALPWERETSPSCC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G27080		NRT1.6	nitrate transporter 1.6 (.1)		Lus10038615 [exp]	0	1
AT5G46220			Protein of unknown function (D...		Lus10038497 [exp]	7.1	0.8974
AT1G52190			Major facilitator superfamily ...		Lus10038614 [exp]	11.0	0.8902
AT5G46340		RWA1	REDUCED WALL ACETYLATION 1, O-...		Lus10012523 [exp]	19.8	0.8884
AT2G46760			D-arabinono-1,4-lactone oxidas...		Lus10010106 [exp]	22.0	0.8624
AT3G20860		ATNEK5	NIMA-related kinase 5 (.1)		Lus10031264 [exp]	22.8	0.8870
AT5G45290			RING/U-box superfamily protein...		Lus10035680 [exp]	25.7	0.8846
AT1G13635			DNA glycosylase superfamily pr...		Lus10019199 [exp]	31.9	0.8806
AT3G19895			RING/U-box superfamily protein...		Lus10000199 [exp]	37.1	0.8059
AT4G28500	NAC	ANAC073, SND2, ...	SECONDARY WALL-ASSOCIATED NAC ...		Lus10018637 [exp]	38.3	0.8816
AT1G63300			Myosin heavy chain-related pro...		Lus10008482 [exp]	39.8	0.8708

Compare expression of checked genes

Lus10038615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.