Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 360 / 9e-118 Major facilitator superfamily protein (.1) AT3G16180 359 / 9e-118 Major facilitator superfamily protein (.1) AT1G69870 263 / 2e-80 NRT1.7 nitrate transporter 1.7 (.1) AT1G18880 260 / 1e-79 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT1G68570 256 / 3e-78 Major facilitator superfamily protein (.1) AT5G62680 253 / 1e-76 Major facilitator superfamily protein (.1) AT3G47960 247 / 3e-74 Major facilitator superfamily protein (.1) AT2G02040 220 / 1e-64 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1) AT3G54140 220 / 1e-64 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT5G28470 219 / 2e-64 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037896 [exp] 676 / 0 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10035860 [exp] 363 / 1e-118 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 349 / 3e-113 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 317 / 5e-101 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 269 / 2e-82 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 266 / 1e-81 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10041466 [exp] 266 / 3e-81 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10036705 [exp] 260 / 3e-79 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036669 [exp] 258 / 3e-78 AT5G62680 758 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240000 [exp] 424 / 3e-143 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 385 / 9e-128 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 342 / 3e-111 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 341 / 1e-110 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 340 / 3e-110 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 338 / 1e-109 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 329 / 5e-106 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 317 / 2e-101 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041800 [exp] 311 / 1e-99 AT1G52190 551 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040301 [exp] 306 / 2e-98 AT1G52190 493 / 3e-170 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10038616 pacid=23143107 polypeptide=Lus10038616 locus=Lus10038616.g ID=Lus10038616.BGIv1.0 annot-version=v1.0 ATGGTGATCTACTTGACGAGAGAGTTCCAGATGGGTGCAGTAGCAGCAAGCACAATCATCTCACTCTGGTCTGCTACTTCTTCATTTCTGGCGATCTTTG GGGCTTTCCTTTCTGACTCTTTACTCGGCCGCTTCACTGTTATTCTCATTGGTTCTTCCTTCTCCCTTCTCGGAACCACTGGGTTGTGGTCAACAGCAAT GCTTCCGGAGTTAAGGCCACCACCTTGCGAGTCCGTCAGTTGCGTAACAGCAGCCACGCCAACTCAGCTAGCCATCCTGTACGCATCACTGGGACTGGTA TCCCTTGGATCAGGCTGCCTTATGCCTTGCTCCATGGCATTCGGCGCAGACCAACTCGACAAGAAAGACAACCCAAATAACGAAAGGGTGTTGCAAGGCT TCTTCAACTGGTACTACGCCTTTAGCGGAGCCGCCACTTTACTTGGACTCACTGTCGTGGTGTATGTCCAGGACACCTACGGATGGCAAGTTGGACTTGC GGTGCCTGCGTTCCTAGTCTTGTTCTCTACTCTCTTGTTTTTGCTGCCTTCCTCCATTTATGTCAAGCACCAGGCTAGAGGTGGTTTGTTTCTTGGTTGC TTCCGAGTTTTGGTGGCTACTATCTGCAAGACAAGTTATTGTTGTAATGTTAAAGATGAACACGGGGCTACTCGTGGGCTTGTTGAGCATTTGGATGTCG ACACTCGCCACCGATACTATTTTCAAGGCCTTATTAACGACAACAACAACAACTTGATATCCCCTACTCCTAACTTGAGGTGGCTAAACAAAGCATGCTT GATTCTGAACCCAGAGACGGACATAAACCCACACGACGGTTCAGCCAAAAACCCATGGACCCTTTGCACAGTAGAAGAGGTAGAAGCCGTGAAATCCATA GCCAGAGTGTTACCCGTTTGGTCAACATCCTTCCTATTCCACCTCACCCATATTCAGACCCCATTCATGATCCTCCAAGCACAAACCATGAACAGACACA TCTTCTCCAATTCTTTCGAATTCCCACCAGGGTCACTCAATACGTTCACCTTGATCACTTTCACCCTCTCCATCATCCTCTACGACTCCGTACTAGTCCC TATCCTTTCGAAACTGACCGGAAATCCACGCGGACTCACCACCAACGTCCGCCTCGGAGCAGGGATGATCTTGGCCATCTCGGCCATGACCATCTCTGGA GCTGTGGAGGCCGCGAGGAGACGGAACGCTGCCCGAGAAGAAGACATGATATCGGTGCTGTGGCTGGTGCCGGCTCTTCTTCTGTTTGGGATGGCTCAGA CTCTGAATTCCATCGAGCAGATTGCGTTTTACTATTCACAGTTGCCTAAGGCGATGTCGAGTATTGCTATGTCGTTGTTCACATTGGGGGCCGCCTTAGG GAGTTTGTTGTCCAGTGTGTTGATTGATGCTGTGGATCGTTTCAGTTCTGGAGGAGGCAAGGAGAGCTGGCTGTGTACCAATCTTAACGAGGGTCGATTG GATTATTACTATTGGCTCATTGCTGGGATTTGCTCTGCCAATTTTGTGTATTTCTTGCTCTGTTGCAGGACTTTTACTTAG
AA sequence Show only first row Show all	>Lus10038616 pacid=23143107 polypeptide=Lus10038616 locus=Lus10038616.g ID=Lus10038616.BGIv1.0 annot-version=v1.0 MVIYLTREFQMGAVAASTIISLWSATSSFLAIFGAFLSDSLLGRFTVILIGSSFSLLGTTGLWSTAMLPELRPPPCESVSCVTAATPTQLAILYASLGLV SLGSGCLMPCSMAFGADQLDKKDNPNNERVLQGFFNWYYAFSGAATLLGLTVVVYVQDTYGWQVGLAVPAFLVLFSTLLFLLPSSIYVKHQARGGLFLGC FRVLVATICKTSYCCNVKDEHGATRGLVEHLDVDTRHRYYFQGLINDNNNNLISPTPNLRWLNKACLILNPETDINPHDGSAKNPWTLCTVEEVEAVKSI ARVLPVWSTSFLFHLTHIQTPFMILQAQTMNRHIFSNSFEFPPGSLNTFTLITFTLSIILYDSVLVPILSKLTGNPRGLTTNVRLGAGMILAISAMTISG AVEAARRRNAAREEDMISVLWLVPALLLFGMAQTLNSIEQIAFYYSQLPKAMSSIAMSLFTLGAALGSLLSSVLIDAVDRFSSGGGKESWLCTNLNEGRL DYYYWLIAGICSANFVYFLLCCRTFT

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10038616 [exp]	0	1
AT3G25250		AtOXI1, OXI1, A...	oxidative signal-inducible1, A...		Lus10009592 [exp]	3.2	0.9166
AT2G35660		CTF2B, CTF2A	FAD/NAD(P)-binding oxidoreduct...		Lus10000593 [exp]	3.2	0.9388
AT1G71040		LPR2	Low Phosphate Root2, Cupredoxi...		Lus10032443 [exp]	3.7	0.9199
AT4G32260		PDE334	PIGMENT DEFECTIVE 334, ATPase,...		Lus10041039 [exp]	3.9	0.9421
AT2G13290			beta-1,4-N-acetylglucosaminylt...		Lus10038093 [exp]	4.4	0.8984
AT3G21670			Major facilitator superfamily ...		Lus10035317 [exp]	6.0	0.9223
AT4G25650		TIC55-IV, PTC52...	TRANSLOCON AT THE INNER ENVELO...		Lus10025415 [exp]	6.2	0.9279
AT5G57040			Lactoylglutathione lyase / gly...		Lus10021574 [exp]	6.7	0.9195
AT5G52420			unknown protein		Lus10039248 [exp]	7.7	0.9238
AT5G10770			Eukaryotic aspartyl protease f...		Lus10026244 [exp]	8.5	0.8860

Compare expression of checked genes

Lus10038616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.