Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52190 332 / 1e-106 Major facilitator superfamily protein (.1) AT3G16180 328 / 3e-105 Major facilitator superfamily protein (.1) AT1G69870 227 / 2e-66 NRT1.7 nitrate transporter 1.7 (.1) AT1G69860 220 / 2e-64 Major facilitator superfamily protein (.1) AT1G68570 211 / 9e-61 Major facilitator superfamily protein (.1) AT5G62680 211 / 2e-60 Major facilitator superfamily protein (.1) AT1G27080 209 / 4e-60 NRT1.6 nitrate transporter 1.6 (.1) AT5G28470 207 / 2e-59 Major facilitator superfamily protein (.1) AT1G18880 206 / 8e-59 NRT1.9 nitrate transporter 1.9, Major facilitator superfamily protein (.1) AT3G47960 204 / 1e-57 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037896 [exp] 775 / 0 AT1G52190 479 / 3e-163 Major facilitator superfamily protein (.1) Lus10038616 [exp] 525 / 0 AT1G52190 446 / 2e-151 Major facilitator superfamily protein (.1) Lus10035860 [exp] 323 / 1e-102 AT1G52190 787 / 0.0 Major facilitator superfamily protein (.1) Lus10025802 [exp] 299 / 2e-93 AT1G52190 764 / 0.0 Major facilitator superfamily protein (.1) Lus10023663 [exp] 281 / 8e-87 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 240 / 5e-71 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 227 / 1e-66 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10036705 [exp] 225 / 2e-65 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10017817 [exp] 218 / 5e-63 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240000 [exp] 384 / 8e-127 AT1G52190 628 / 0.0 Major facilitator superfamily protein (.1) Potri.001G185700 [exp] 352 / 4e-114 AT1G52190 785 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041500 [exp] 312 / 4e-99 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041400 [exp] 310 / 2e-98 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040500 [exp] 310 / 4e-98 AT1G52190 561 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041600 [exp] 302 / 4e-95 AT1G52190 590 / 0.0 Major facilitator superfamily protein (.1) Potri.012G087500 [exp] 295 / 3e-92 AT1G52190 542 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040400 [exp] 280 / 1e-86 AT3G16180 559 / 0.0 Major facilitator superfamily protein (.1) Potri.018G041700 [exp] 269 / 1e-82 AT1G52190 562 / 0.0 Major facilitator superfamily protein (.1) Potri.018G040301 [exp] 264 / 1e-81 AT1G52190 493 / 3e-170 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF00854 [flax] [poplar] PTR2 POT family
Representative CDS sequence Show only first row Show all	>Lus10038618 pacid=23143102 polypeptide=Lus10038618 locus=Lus10038618.g ID=Lus10038618.BGIv1.0 annot-version=v1.0 ATGGAGGAAAATTTGGGCGGCGAGAATGAGAAAACAACGGCGGGGGCGCCTCTGATCAGGAAGGAGGAAACGGTCAGAAAGCCAAAGGGTGGCTTCAGAA CCATCCCCTTCATCATATTGAATGAAGGGTTTCAGTCGTTGGCAAGCACAGGGCTGCACGCAAACATGGTGATATACTTGACGAACGAGTTCCAGATGGG TGCAGTGAGATCAAGCAGCATAATCTCACTCTGGTCAGCTACTTCTTCATTCATGGCAGTGTTTGGAGCTGTGCTTTCCGACTCTTTCTTAGGCCGGTTC ACAGTCATTCTCCTTGGTTCCTCTTTCTCCCTTCTCGGAACCGTTGGGTTGTGGTCGACAGCAGTGATTCCGGAGTTACGGCCACCACCATGCGATTCCA TCAGTTGCGTGACTACAGCTGCAACGCCAACTCAGCTAGCAATCCTGTACGCATCTCTGGGACTCATATCCGTTGGATCAGGCTGCCTTCTGCCTTGCTC AATGGCATTCGGTGCTGACCAATTGGACAAGAAAGACAACCCAAATAACGAAGGAGTGTTGCAGGGCTTCTTCAACTGGTACTACGCCATTGGCGGAGTT GCCACTTTGCTTGGGCTCACTGTCGTGGTGTATATTCAGGACACCTACGGATGGCCAGTTGGGCTTTCAGTGCCTGCTTTCCTCGTCCTGTTCTCTACTC TCTTATTTTTGCTGCCTTCCTCCATTTACGTCAAGCACCAGGCTAGAGGCAGCTTGTTTGTGGGTTGCTTCAGAGTTTTGGTGGCTGCTATCTGCAAGAC TAGTTCTAATAATGTTAAAGATGCAGAACAAGAAGGAATCAATAGTACTGTTGGGCTTCTTGAGGATTTGGATGACAGTAGACATGGCTATTTTCACGGC CTTGATCACAACGGCTTCATCACTCCTACTCCTCACTTGAGGTGCCTAAACAAAGCTTGCTTGATTGTGAACTCAGAGACGGACATAAACCCAGATGACG GTTCAGCGAAAAACCCATGGACCTTATGCACAGTAGAAGAGCCTAGCTCAGTCACCATTCATGATCCTCCAAGCAGAAACCATGAACAGACACATCTTCT CCAACTCTTTCGAATTCCCTCCGGGATCACTGGGTTCGTTCAACTTGATCAGTTTCACCCTCTCCATCATCATCTACGACTCCATACTAATCCCCATCCT TTCGAAATTCACTGGGAACCCGCGTGGCCTCAGCACCAACGTCCGCCTCGGAGCAGGGATGGTCTTGGCCATCTCGGCCATGACCATCTCTGGAGCTGTG GAGGCCGGGAGGGGACGGGACGCTGCCCGGGCAGAAGATGGAACGCTACTGCAGAGCAAGACGCGGTGGACAATATTTCTGTTTTGTGGCTGATGCCTTC TCTTGTTTTGCTCGGAATGGCTCAGGCTCTGAATTACATTGAGCAGATTTCGTTCTACTACACCCACTTGCCTAAGGCAATGTCGAGTGTTGCTGTGTCC ATGCTGACTTTGATGACGGCCATAGGGAGCTTGTTGGCGAGTGCGTTGATTGATGTTGTGGATGGTTTCAGTTCCAGTGGAGGGAAGGAAAGCTGGTTGT CTACCAATCTTAACGAGGGTCACTTGGATTATTACTATTTTCTCATTGCTGGGATTTGTTTCCTCAATTTTCTGTATTTCTTGCTCTGTTCTAGGACTGT CAATTAA
AA sequence Show only first row Show all	>Lus10038618 pacid=23143102 polypeptide=Lus10038618 locus=Lus10038618.g ID=Lus10038618.BGIv1.0 annot-version=v1.0 MEENLGGENEKTTAGAPLIRKEETVRKPKGGFRTIPFIILNEGFQSLASTGLHANMVIYLTNEFQMGAVRSSSIISLWSATSSFMAVFGAVLSDSFLGRF TVILLGSSFSLLGTVGLWSTAVIPELRPPPCDSISCVTTAATPTQLAILYASLGLISVGSGCLLPCSMAFGADQLDKKDNPNNEGVLQGFFNWYYAIGGV ATLLGLTVVVYIQDTYGWPVGLSVPAFLVLFSTLLFLLPSSIYVKHQARGSLFVGCFRVLVAAICKTSSNNVKDAEQEGINSTVGLLEDLDDSRHGYFHG LDHNGFITPTPHLRCLNKACLIVNSETDINPDDGSAKNPWTLCTVEEPSSVTIHDPPSRNHEQTHLLQLFRIPSGITGFVQLDQFHPLHHHLRLHTNPHP FEIHWEPAWPQHQRPPRSRDGLGHLGHDHLWSCGGREGTGRCPGRRWNATAEQDAVDNISVLWLMPSLVLLGMAQALNYIEQISFYYTHLPKAMSSVAVS MLTLMTAIGSLLASALIDVVDGFSSSGGKESWLSTNLNEGHLDYYYFLIAGICFLNFLYFLLCSRTVN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52190			Major facilitator superfamily ...		Lus10038618 [exp]	0	1
AT4G13150			unknown protein		Lus10038175 [exp]	2.2	0.8622
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10021140 [exp]	2.8	0.8509
AT4G15210		BAM5, AT-BETA-A...	REDUCED BETA AMYLASE 1, ARABID...		Lus10018491 [exp]	3.7	0.8589
AT5G01030			Protein of unknown function (D...		Lus10021110 [exp]	5.5	0.8569
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Lus10007983 [exp]	8.3	0.8137
AT3G54660		ATGR2, EMB2360,...	glutathione reductase (.1)		Lus10024857 [exp]	13.4	0.8487
AT5G05580		AtFAD8, SH1, FA...	fatty acid desaturase 8 (.1.2)		Lus10005039 [exp]	16.0	0.8495
AT2G45660	MADS	ATSOC1, SOC1, A...	SUPPRESSOR OF OVEREXPRESSION O...		Lus10036542 [exp]	21.6	0.8231
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Lus10020535 [exp]	22.0	0.8332
AT4G02990		RUG2, BSM	RUGOSA 2, BELAYA SMERT, Mitoch...		Lus10014877 [exp]	24.2	0.8416

Compare expression of checked genes

Lus10038618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.