Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11540 693 / 0 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46740 446 / 9e-151 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46750 446 / 1e-150 D-arabinono-1,4-lactone oxidase family protein (.1) AT2G46760 443 / 4e-149 D-arabinono-1,4-lactone oxidase family protein (.1) AT1G32300 414 / 3e-138 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56490 413 / 7e-138 D-arabinono-1,4-lactone oxidase family protein (.1) AT5G56470 230 / 1e-71 FAD-dependent oxidoreductase family protein (.1) AT3G47930 62 / 6e-10 ATGLDH "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004735 [exp] 431 / 2e-144 AT2G46760 653 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012610 [exp] 416 / 7e-140 AT2G46760 761 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10030206 [exp] 416 / 1e-138 AT2G46760 657 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10002688 [exp] 415 / 1e-138 AT2G46760 674 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10010105 [exp] 408 / 9e-136 AT2G46760 709 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10012609 [exp] 383 / 2e-127 AT2G46760 642 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10007795 [exp] 109 / 1e-24 AT5G47380 562 / 0.0 Protein of unknown function, DUF547 (.1) Lus10010106 [exp] 86 / 1e-19 AT2G46760 190 / 4e-58 D-arabinono-1,4-lactone oxidase family protein (.1) Lus10031013 [exp] 58 / 2e-08 AT3G47930 932 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G039600 [exp] 794 / 0 AT5G11540 771 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178300 [exp] 479 / 4e-163 AT2G46760 785 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.002G178400 [exp] 478 / 1e-162 AT2G46760 809 / 0.0 D-arabinono-1,4-lactone oxidase family protein (.1) Potri.016G040300 [exp] 62 / 6e-10 AT3G47930 794 / 0.0 "L-galactono-1,4-lactone dehydrogenase", L-galactono-1,4-lactone dehydrogenase (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0077 [flax] [poplar] FAD_PCMH PF01565 [flax] [poplar] FAD_binding_4 FAD binding domain CL0277 [flax] [poplar] FAD-oxidase_C PF04030 [flax] [poplar] ALO D-arabinono-1,4-lactone oxidase
Representative CDS sequence Show only first row Show all	>Lus10038620 pacid=23143146 polypeptide=Lus10038620 locus=Lus10038620.g ID=Lus10038620.BGIv1.0 annot-version=v1.0 ATGCAAAGCTACTCCAGCTGCTGCTGGTGGTGGTGGCCCATTCTTGCTCTCCAATTAGCTCTTTACTGGTTCCCAATCCACGCCTTCCCTCCGGCGCCCC CGATTCGGTGCAACGGCGACGGTGGATGCATCCTTTACAACTCCTACGGTGTCTGGAACGACAGGACTGACTGCCCGGTCCCCAACGTTACATACCCAAC GACAGAGGAAGAGCTTAGGTTAGCAGTTGCCTTTGCCAATCGGAACAACCTCAAGGTCAAGGTTGTCAGCAAATTCTCCCACACCATTCCTAAACTTGCC TGCCCAGATAGTACCCATTCGTTGCTGATAAGCACATCCAAGTACAGCTCCAGTATTGAGATCGACAAGGCCCGTTTGTCAGTCACCGTCGATGCTGGTG TAGGGCTGAGGCAGCTGATTGATGCAGTTGAAGAAGCAGGCCTCAGCTTGACTGCTTCACCTTATTGGGAAGGTGTCAGTGTTGGTGGCCTTATTAGTAC AGGATCTCATGGAAGCTCATGGTGGGGGAAAGGCGGAGCTGTTCACGATCATTTGCTTGCTCTTACCCTTGTCGTTCCTTCCAAACCATCTGAAGGGTAC GCCAAGGTTATAAGAATTGGGGAGAAAGATCCACTCTTTAATGCTGCCACAGTTTCCCTGGGAATGCTCGGCGTTATCTCCAAGGTGACGCTGTCGCTGG AGAAAGGATTTAAGAGAAGCATAACATTCAATTTCACATCCGATTCGCAATTAGAGGACATCTTCAAGCAACATGCCATGGAAAATGAGTTTGGTGACAT TACCTGGTACCCGTCCAGACATACTGCCGTGTACAGATACGATAACAGAGTCCCTTTACAAACCTCTGGCGATGGCTCTTTCGATTTCATTGGATTCCAA GCCAACTCCATCCTCATTTCCAAATCAACTAGAGCAGCAGAGAAAGCATTGGAGAAATCTAGAAGCGTGACGGGGAAATGCGCAATGGCGAGCACATTCT TAGGGGCTAAGAAATTGGTGGCAAACGGACTGAAAAACGGCCTGATTTTCACTGGTTACCCAGTGGTTGGTCGTCAGGGGAAGATGCAGACTTCTGGATC CTGTCTCTACTCACCTTCCTACAGAATCGACGAAGCTTGCGCTTGGGATCCAACCACTAAAGGGCTTTTCTTCTACGAATCAACGGCAATCTTCCCAGCT TCCAAATTTGCAGATTTCATCCGGGACGTGAAGAAACTCCGCGACCTGAAGCCAGACAACCTGTGCGGAGTGGACATCTACAACGGGTTCCTGATCCGAT TCATAAAGGGCTCCAATGCATACCTAGGGCAATCGGAGGACTCGGTGGTGGTGGACTTCAACTACTACAGGGCAGACGACGGAGAGACGCCGAGGCTGAA CGAGGACGTTTGGGAGGAAGTGGAGCAGATTGCGTTCCTCAAGTACGGAGCCAAGCCGCACTGGGCCAAGAACAGGAACGCGGCGTTCGGCGGGGTTCAG GCTAAGTACCCAAACTTTGGGAAGTTCATGGCGGCGAAAGGGCAGTTAGATCCGGGAAACCTGTTTTCGAGCGGATGGTCGGAGCAGATGATGACCGGGG AAGCAGCGGCGGATGGGAATAAGGCGGCGGGGTGTGGTCTGGAAGGTGGGTGTGTTTGCTCAAAGGATTCGGACTGTAGTCCGGAGAAAGGTTACACGTG TCAGCATGGAGCTGTGTACGAAGAAGCCAGAGTCTGCAGATTTTCTTCTCCTTCCCCTTCTTCCAGTGTTGCATAA
AA sequence Show only first row Show all	>Lus10038620 pacid=23143146 polypeptide=Lus10038620 locus=Lus10038620.g ID=Lus10038620.BGIv1.0 annot-version=v1.0 MQSYSSCCWWWWPILALQLALYWFPIHAFPPAPPIRCNGDGGCILYNSYGVWNDRTDCPVPNVTYPTTEEELRLAVAFANRNNLKVKVVSKFSHTIPKLA CPDSTHSLLISTSKYSSSIEIDKARLSVTVDAGVGLRQLIDAVEEAGLSLTASPYWEGVSVGGLISTGSHGSSWWGKGGAVHDHLLALTLVVPSKPSEGY AKVIRIGEKDPLFNAATVSLGMLGVISKVTLSLEKGFKRSITFNFTSDSQLEDIFKQHAMENEFGDITWYPSRHTAVYRYDNRVPLQTSGDGSFDFIGFQ ANSILISKSTRAAEKALEKSRSVTGKCAMASTFLGAKKLVANGLKNGLIFTGYPVVGRQGKMQTSGSCLYSPSYRIDEACAWDPTTKGLFFYESTAIFPA SKFADFIRDVKKLRDLKPDNLCGVDIYNGFLIRFIKGSNAYLGQSEDSVVVDFNYYRADDGETPRLNEDVWEEVEQIAFLKYGAKPHWAKNRNAAFGGVQ AKYPNFGKFMAAKGQLDPGNLFSSGWSEQMMTGEAAADGNKAAGCGLEGGCVCSKDSDCSPEKGYTCQHGAVYEEARVCRFSSPSPSSSVA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11540			D-arabinono-1,4-lactone oxidas...		Lus10038620 [exp]	0	1
AT1G14220			Ribonuclease T2 family protein...		Lus10027978 [exp]	5.9	0.8344
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	6.7	0.7960
AT4G38430		ATROPGEF1, ROPG...	rho guanyl-nucleotide exchange...		Lus10005644 [exp]	9.5	0.7380
AT3G52500			Eukaryotic aspartyl protease f...		Lus10004204 [exp]	10.4	0.7950
AT1G21380			Target of Myb protein 1 (.1)		Lus10018948 [exp]	12.4	0.7915
AT4G32070		Phox4	Phox4, Octicosapeptide/Phox/Be...		Lus10001948 [exp]	15.3	0.7450
AT5G05840			Protein of unknown function (D...		Lus10004669 [exp]	16.4	0.7498
AT2G14095			unknown protein		Lus10010746 [exp]	17.1	0.8253
AT1G30630			Coatomer epsilon subunit (.1)		Lus10023385 [exp]	17.7	0.7913
AT5G62930			SGNH hydrolase-type esterase s...		Lus10027675 [exp]	18.9	0.7578

Compare expression of checked genes

Lus10038620 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.