Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25757 890 / 0 RNA polymerase I-associated factor PAF67 (.1) AT5G25754 890 / 0 RNA polymerase I-associated factor PAF67 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037897 [exp] 1075 / 0 AT5G25757 884 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G241300 [exp] 996 / 0 AT5G25757 902 / 0.0 RNA polymerase I-associated factor PAF67 (.1) Potri.018G038500 [exp] 972 / 0 AT5G25757 879 / 0.0 RNA polymerase I-associated factor PAF67 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF10255 [flax] [poplar] Paf67 RNA polymerase I-associated factor PAF67
Representative CDS sequence Show only first row Show all	>Lus10038622 pacid=23143076 polypeptide=Lus10038622 locus=Lus10038622.g ID=Lus10038622.BGIv1.0 annot-version=v1.0 ATGGCCGCCAATTACGACTACGATGAAGCTCCCAGCCGCTACGACGACCAAGCTGCTGCTAACCGACATCAGGAAGTTGGTGGCTACGACCCAAACTTCG TTCCGGATTCCGTGAAATCCTTCGTCGTTCACCTCTATCGCCATATCAGGGAGAAGAATGTCTACGAGATCCACCAGATGTACGAAACTTCCTTCCAGAC TCTGTCCGAGCGGTTGTTCAAGGACACTCCGTGGCCTTCCGTCGAGGCCGTGGCTCACTATGTGGACAATGATCACGTCTTCTGTCTCCTGTACCGCGAG ATGTGGTTCCGCCACCTCTATGCTCGTCTGTCGCCTACTCTTAAGCAGAGGATCGACAGTTGGGACAATTACTGCAGCCTTTTCCAGGTCGTGTTGCATG GAGTAGTGAATATGCAGTTGCCAAATCAGTGGCTGTGGGATATGGTGGATGAGTTTGTTTACCAGTTTCAGAGCTTTTGCCAGTTTAGAGCTAAGATGAA GACCAAGAGTGAGCAAGAGATTGCGCTTCTGAGGCAATTTGATCAGGCATGGAATGTATATGGAGTGCTCAACTTCTTGCAAGCACTGGTAGAAAAGTCA ACCATCACTCAGATCCTGGAGCAGGAGAAGGAAGGCCTTGAACAATTCACTGCCACTGATGGTTATGATTACAGTGGTGGAAGCAATGTTCTAAAGGTAC TGGGATACTTCAGTATGATTGGTTTGTTGAGAGTTCACTGCCTTCTGGGAGACTATCATACTGGCCTCAAGTGCTTACAACCCATTGACATTTGTCAACA AGGTGTCTACACCAGTGTTATAGGAAGCCACATCACTACCATATACCATTACGGCTTTGCAAACCTTATGCTCAGGAGGTATGTAGATGGTATCCGGGAG TTCAACAAAATTCTCCTGTATATTTACAAGACCAAGCAATATCATCAGAAGTCCCCACAGTATGAACAAATACTAAAGAAGAATGAGCAAATGTATGCCT TGCTTGCAATTTGTCTGTCACTTTGCCCTCAACTGAAGCTTGTTGAGGAAACTGTGAACTCCCAGTTACGTGAGAAGTATGGGGAAAAGATGGGTAGAAT GCAGAGATATGATGACGAGGCATTTGCTATGTATGATGAGCTCTTCTCATATGCGTGTCCCAAATTCATTACCCCTTCAGCTCCTAGCTTTGACGAGCCT CTTGTAAATTACAACCAGGATGCATATAGATTACAGTTGAAGCTTTTCCTTTATGAGGTGAAGCAGCAACAACTGCTATCTGGTGTGCGGACCTTCCTCA AAGTTTATTCAACTATATCACTTGGAAAGCTTGCGAATTACTTGGAAGTTGATGAACCCACATTAAGGACAATATTGATGGCATACAAGCACAAGACTCA TGCGGTTGATTCTGACAGGAAGATCATCTCCAACGCGGATGTTGATTTCTACATTGACGATGACATGTTACGTGTTGTTGACTCCAAACCAGTGAAGCGA TATGGGGATTTCTTCTTGCGGCAAATTGTGAAGCTTGAAGGAGTGATGAACGATCTTGATAGGATAAAGCTGGATTAA
AA sequence Show only first row Show all	>Lus10038622 pacid=23143076 polypeptide=Lus10038622 locus=Lus10038622.g ID=Lus10038622.BGIv1.0 annot-version=v1.0 MAANYDYDEAPSRYDDQAAANRHQEVGGYDPNFVPDSVKSFVVHLYRHIREKNVYEIHQMYETSFQTLSERLFKDTPWPSVEAVAHYVDNDHVFCLLYRE MWFRHLYARLSPTLKQRIDSWDNYCSLFQVVLHGVVNMQLPNQWLWDMVDEFVYQFQSFCQFRAKMKTKSEQEIALLRQFDQAWNVYGVLNFLQALVEKS TITQILEQEKEGLEQFTATDGYDYSGGSNVLKVLGYFSMIGLLRVHCLLGDYHTGLKCLQPIDICQQGVYTSVIGSHITTIYHYGFANLMLRRYVDGIRE FNKILLYIYKTKQYHQKSPQYEQILKKNEQMYALLAICLSLCPQLKLVEETVNSQLREKYGEKMGRMQRYDDEAFAMYDELFSYACPKFITPSAPSFDEP LVNYNQDAYRLQLKLFLYEVKQQQLLSGVRTFLKVYSTISLGKLANYLEVDEPTLRTILMAYKHKTHAVDSDRKIISNADVDFYIDDDMLRVVDSKPVKR YGDFFLRQIVKLEGVMNDLDRIKLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25757			RNA polymerase I-associated fa...		Lus10038622 [exp]	0	1
AT3G11830			TCP-1/cpn60 chaperonin family ...		Lus10008406 [exp]	1.0	0.9743
AT1G15440		ATPWP2	\(PERIODIC TRYPTOPHAN PROTEIN ...		Lus10034114 [exp]	1.4	0.9742
AT1G31660			unknown protein		Lus10032891 [exp]	1.7	0.9714
AT5G14520			pescadillo-related (.1)		Lus10000618 [exp]	2.0	0.9692
AT4G07410		PCN	POPCORN, Transducin family pro...		Lus10024128 [exp]	2.6	0.9596
AT2G40360			Transducin/WD40 repeat-like su...		Lus10011471 [exp]	2.8	0.9595
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10011474 [exp]	3.2	0.9646
AT1G80410		OMA, EMB2753	OMISHA, EMBRYO DEFECTIVE 2753,...		Lus10023111 [exp]	3.5	0.9611
AT4G34910			P-loop containing nucleoside t...		Lus10015433 [exp]	5.1	0.9506
AT2G37690			phosphoribosylaminoimidazole c...		Lus10042546 [exp]	5.5	0.9490

Compare expression of checked genes

Lus10038622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.