Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G32720 334 / 8e-111 ATLA1 La protein 1 (.1.2) AT1G79880 218 / 3e-66 RNA recognition motif (RRM)-containing protein (.1), RNA recognition motif (RRM)-containing protein (.2), RNA recognition motif (RRM)-containing protein (.3) AT2G43970 78 / 3e-15 RNA-binding protein (.1.2) AT5G46250 69 / 2e-12 RNA-binding protein (.1.2.3) AT3G19090 50 / 2e-06 RNA-binding protein (.1) AT5G21160 47 / 4e-05 LA RNA-binding protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10022135 [exp] 452 / 1e-156 AT4G32720 389 / 6e-133 La protein 1 (.1.2) Lus10011685 [exp] 431 / 9e-147 AT4G32720 382 / 1e-128 La protein 1 (.1.2) Lus10023315 [exp] 76 / 1e-14 AT5G46250 331 / 4e-111 RNA-binding protein (.1.2.3) Lus10027080 [exp] 76 / 2e-14 AT2G43970 333 / 7e-108 RNA-binding protein (.1.2) Lus10038494 [exp] 74 / 4e-14 AT5G46250 323 / 5e-108 RNA-binding protein (.1.2.3) Lus10025608 [exp] 74 / 8e-14 AT2G43970 332 / 2e-107 RNA-binding protein (.1.2) Lus10012058 [exp] 64 / 1e-10 AT3G19090 427 / 2e-146 RNA-binding protein (.1) Lus10027925 [exp] 44 / 0.0001 AT3G19090 291 / 8e-96 RNA-binding protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037900 [exp] 389 / 2e-131 AT4G32720 382 / 6e-130 La protein 1 (.1.2) Potri.006G241800 [exp] 383 / 3e-129 AT4G32720 403 / 3e-138 La protein 1 (.1.2) Potri.007G144800 [exp] 72 / 4e-13 AT2G43970 357 / 2e-117 RNA-binding protein (.1.2) Potri.017G007400 [exp] 71 / 5e-13 AT2G43970 306 / 2e-98 RNA-binding protein (.1.2) Potri.011G080700 [exp] 70 / 7e-13 AT5G46250 325 / 5e-109 RNA-binding protein (.1.2.3) Potri.009G106500 [exp] 67 / 1e-11 AT3G19090 348 / 1e-116 RNA-binding protein (.1) Potri.004G144700 [exp] 62 / 4e-10 AT3G19090 363 / 3e-122 RNA-binding protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF08777 [flax] [poplar] RRM_3 RNA binding motif CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CL0123 [flax] [poplar] HTH PF05383 [flax] [poplar] La La domain
Representative CDS sequence Show only first row Show all	>Lus10038624 pacid=23143045 polypeptide=Lus10038624 locus=Lus10038624.g ID=Lus10038624.BGIv1.0 annot-version=v1.0 ATGGCGTCACCGTCCTTAGACGAAGACACCGCTGAAGAAGTCCTCCGACAGGTGGAATATTACTTCAGTGATAGCAATCTCTCCCGGGACAAGTTCCTGT ATAAGACGATCACATCTAGCGAGGATTGCTTGGTTAGCTTGAATCTGATATGCTCGTTTAAGAAAATGAAGGCTCACTTGAAATTGGGACAAGTCAAGCA GGAAGACATTGCAGATGATACTTTGAAAGCAGTGGCTCAAACTCTTGGGAAATCTGCTTCTCTTAAACTTTCTCAAGATGGAAGGAAAGTTGGTAGGGTT ACCCCACTGTTGAATCCAGAAGAGAAAGCAGAGCAACTGGATCAAAGAACGGTTGCTGTGTCTCCGTTGCCTTTTGATATAGAGCAGGAAGCATTGCTGT TATTTTTCAGTCAACATGGCAAGGTCAATAGTGTGAGATTGCCTAAACATATCGGTAACATGAAGGCATTTTGTGGTACTTCTTTGGTTGAGTTTTCATC TGATGAAGAAGCTGACAAGATTCTGGGTCAAAGCTTGACCATAGGAAGCATAGAGCTAGAACTGAAACCAAAGAAAGAATTCGATGCAGATCGAGCACAG AAGTTGAAGGAATTTGAAGCGGCCAATCCTCAGTTGAATACAGAACATAAGGAAAATTCAAGCTACACAAAGGGTTTGATTGTTAGTTTTAAATTGAAGA CCATATTAAGAGGAGATCAAGTAGGAAAGGAATCTAGTAAAGATGATGGGACGGAAGCAGATACACCATTAACCTCTATGGACAAAACTACTGAAAAAAG TCAAGAGCAGGCACCAGAAGATGGTACTAACAGGGAAGAAGTTGTTGCTATGGAAACTGATAAGGTTAATGAAGGAAAAAACATTGAACACAGAGGAACA ATCTCATCTGAGGAAGAAGAATCATCCAAGGATTTTGCTGGGAAGGATGCAAGAAAAGAGGGTAAATATGACCTGGCTGCCTGCAAGGACAATAAAAATG TGGTTTCACGTGAAGATCTTAAGGCTGTTTTTTGTAAATTTGGCATTGTTAGGTTCATTGATTTTCGCATTGGAGAGGAATCTGGATATGTGAGATTTGA TCGACCTGATGGAGCCGAGAGGGCTCGTGCTGCTGCAGTTTTAGCCAAGGAAGAGGGGCTGGTGGTTAAAAACTTCATAGCTACTTTAGAACCATTAACT GGTAGGGAACTGTTGTTGAGGCCACATATTAAACTACTGATTCCTCACTTGATGGCTCATGTTGGTGAGGCGGAAAAGGAGTATTGGAGCATGCTCCGTG AGAATCAAGGCAAAAACAACAAAGGGAGGGGAGGAAAGTTGAAGAGAGGTGGTAAGCAGAGTCGGTCCAGGGATAATGATTCCGGCAGAGGTGGCAAGCA GCGTCGGTCCAGGGATAATGATTCCGGCAGAGGTGGAAGCAACAAGTTTCAGAAGGTTTGA
AA sequence Show only first row Show all	>Lus10038624 pacid=23143045 polypeptide=Lus10038624 locus=Lus10038624.g ID=Lus10038624.BGIv1.0 annot-version=v1.0 MASPSLDEDTAEEVLRQVEYYFSDSNLSRDKFLYKTITSSEDCLVSLNLICSFKKMKAHLKLGQVKQEDIADDTLKAVAQTLGKSASLKLSQDGRKVGRV TPLLNPEEKAEQLDQRTVAVSPLPFDIEQEALLLFFSQHGKVNSVRLPKHIGNMKAFCGTSLVEFSSDEEADKILGQSLTIGSIELELKPKKEFDADRAQ KLKEFEAANPQLNTEHKENSSYTKGLIVSFKLKTILRGDQVGKESSKDDGTEADTPLTSMDKTTEKSQEQAPEDGTNREEVVAMETDKVNEGKNIEHRGT ISSEEEESSKDFAGKDARKEGKYDLAACKDNKNVVSREDLKAVFCKFGIVRFIDFRIGEESGYVRFDRPDGAERARAAAVLAKEEGLVVKNFIATLEPLT GRELLLRPHIKLLIPHLMAHVGEAEKEYWSMLRENQGKNNKGRGGKLKRGGKQSRSRDNDSGRGGKQRRSRDNDSGRGGSNKFQKV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G32720		ATLA1	La protein 1 (.1.2)		Lus10038624 [exp]	0	1
AT1G58250		SAB	SABRE, Golgi-body localisation...		Lus10003839 [exp]	9.8	0.7306
AT1G22790			unknown protein		Lus10028691 [exp]	9.8	0.7334
AT4G04900		RIC10	ROP-interactive CRIB motif-con...		Lus10018362 [exp]	22.2	0.7257
AT2G17480		ATMLO8, MLO8	MILDEW RESISTANCE LOCUS O 8, S...		Lus10019630 [exp]	33.9	0.6746
AT1G54570			Esterase/lipase/thioesterase f...		Lus10033848 [exp]	45.5	0.6979
AT4G38190		ATCSLD4	ARABIDOPSIS THALIANA CELLULOSE...		Lus10001619 [exp]	47.6	0.6919
AT2G46380			Protein of unknown function (D...		Lus10003905 [exp]	54.2	0.6810
AT5G48250	CO	COL10	B-box type zinc finger protein...		Lus10041096 [exp]	75.4	0.6824
AT4G17150			alpha/beta-Hydrolases superfam...		Lus10039125 [exp]	77.1	0.6812
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	85.6	0.6753

Compare expression of checked genes

Lus10038624 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.