Plant FIBer expression Database

Lus10038625 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G11500 318 / 5e-112 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037899
[exp]
348 / 4e-124 AT5G11500 376 / 9e-135 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.006G241900
[exp]
333 / 4e-118 AT5G11500 348 / 2e-123 unknown protein
Potri.018G037800
[exp]
327 / 1e-115 AT5G11500 340 / 4e-120 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0684 NFACT_RNA-bind PF05670 NFACT-R_1 NFACT protein RNA binding domain
Representative CDS sequence
>Lus10038625 pacid=23143024 polypeptide=Lus10038625 locus=Lus10038625.g ID=Lus10038625.BGIv1.0 annot-version=v1.0
ATGGTATTCTACTTTAAAGCCCGGCCAGAGGTAGGAGATTACACAATTTTCATGGGTCTCGACAAGTATGAAAACGAGGAGCTCATCAAATACGGCTTCC
CCGAAGACATCTGGTTTCATGTGGACAAAATGTCTTCAGCTCATGTTTATGTTCGGCTGCACAAAGGGAACAAAGTTAACAACATTGATGTTGTTTACAC
TCCCTGGTCAAACTTAAAGAAGACTGCTTCAATGGATGTCGGCCAAGTTGGCTTTCATAATTCAAAGATGGTCCGTACTGTGAAAGTGGAGAAGCGGATC
AATGAGATAGTCAATAGGCTGAACAAAACAAAAGTGGAAAGGACACCCGATTTGAGAGCTGAGAGAGAAGCTGTAAATGCAGCAGAAAGGGCTGAGAGGA
AGCTTCATCTGAGAGATAAGAAACGACGGGAGGAAATGGACAGGCTTGAAAAGGAGAGGCAGGCAGAGATGAGGAGCTACAAGGGATTGATGGTGGCAGA
AAAGATGACTTCCAACAAACAAATCGCATCAGAAAGCAAGTCCCTGCAGGAGCTTGAAGACGATTTCATGTGA
AA sequence
>Lus10038625 pacid=23143024 polypeptide=Lus10038625 locus=Lus10038625.g ID=Lus10038625.BGIv1.0 annot-version=v1.0
MVFYFKARPEVGDYTIFMGLDKYENEELIKYGFPEDIWFHVDKMSSAHVYVRLHKGNKVNNIDVVYTPWSNLKKTASMDVGQVGFHNSKMVRTVKVEKRI
NEIVNRLNKTKVERTPDLRAEREAVNAAERAERKLHLRDKKRREEMDRLEKERQAEMRSYKGLMVAEKMTSNKQIASESKSLQELEDDFM

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT5G11500 unknown protein Lus10038625
[exp]
0 1
AT1G16810 unknown protein Lus10033383
[exp]
1.0 0.8887
AT2G02880 mucin-related (.1) Lus10030486
[exp]
2.4 0.8658
AT3G12480 CCAAT NF-YC11 "nuclear factor Y, subunit C11... Lus10024082
[exp]
4.9 0.8608
AT1G65280 DNAJ heat shock N-terminal dom... Lus10017919
[exp]
6.7 0.8544
AT1G50300 TAF15 TBP-associated factor 15 (.1) Lus10030555
[exp]
6.9 0.8359
AT5G19900 PRLI-interacting factor, putat... Lus10000189
[exp]
6.9 0.8582
AT2G29540 ATRPAC14, ATRPC... RNApolymerase 14 kDa subunit (... Lus10040717
[exp]
7.5 0.8575
AT5G25760 PEX4, UBC21 ubiquitin-conjugating enzyme 2... Lus10009495
[exp]
7.6 0.8197
AT5G04280 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/... Lus10037950
[exp]
8.8 0.8479
AT5G55160 ATSUMO2, SUMO2,... small ubiquitin-like modifier ... Lus10032560
[exp]
9.8 0.8255

Lus10038625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.