Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24570 212 / 2e-69 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT2G14860 52 / 4e-08 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G33905 48 / 1e-06 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT1G52870 44 / 2e-05 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT5G43140 44 / 3e-05 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G04470 43 / 3e-05 PMP22 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) AT4G14305 43 / 4e-05 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) AT4G03410 43 / 7e-05 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037900 [exp] 330 / 1e-115 AT3G24570 246 / 3e-82 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10022130 [exp] 246 / 4e-83 AT3G24570 256 / 6e-87 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10011679 [exp] 240 / 4e-81 AT3G24570 249 / 2e-84 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10034922 [exp] 217 / 1e-71 AT3G24570 330 / 4e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10023648 [exp] 215 / 8e-71 AT3G24570 330 / 6e-116 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Lus10011424 [exp] 52 / 9e-08 AT2G14860 288 / 3e-98 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10002118 [exp] 50 / 3e-07 AT2G14860 292 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Lus10032655 [exp] 40 / 0.0006 AT1G52870 499 / 3e-176 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G037100 [exp] 261 / 3e-89 AT3G24570 289 / 6e-100 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.018G081600 [exp] 235 / 6e-79 AT3G24570 309 / 7e-108 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.006G242700 [exp] 190 / 1e-61 AT3G24570 214 / 4e-71 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.009G090600 [exp] 48 / 1e-06 AT4G33905 299 / 1e-102 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.001G296400 [exp] 43 / 7e-05 AT2G14860 300 / 6e-103 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1) Potri.011G123700 [exp] 41 / 0.0004 AT1G52870 472 / 1e-167 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2) Potri.001G404600 [exp] 40 / 0.0007 AT1G52870 438 / 6e-154 Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.1), Peroxisomal membrane 22 kDa (Mpv17/PMP22) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04117 [flax] [poplar] Mpv17_PMP22 Mpv17 / PMP22 family
Representative CDS sequence Show only first row Show all	>Lus10038626 pacid=23143104 polypeptide=Lus10038626 locus=Lus10038626.g ID=Lus10038626.BGIv1.0 annot-version=v1.0 ATGTTCAACTTCTGGAAATGGTTTCAGCATTGCTTGGCGCTACATCCGGTGAAGACCCAGATGCTTAGCTCTGGCTTGATTTGGGGTGCTGGTGATATTG CTGCACAATCCATTAACAATTACACGGCTCAGAAGCCTCTTGTGTTCCAGGATGATGAAATACGTGAAAAGATCAACTGGAAACGAGTAGCAACCACAAG CTTGTTTGGATTTGGATTTGTTGGACCAGTTGGGCACTTCTGGTATGAAGGTCTAGACAGATTCATGAGGTCACAACTGTTTCGACCGAATTCGTTAAGA TTTGTCGGGGTGAAAGTGGCGATTGATGGATTCCTTTTTGGGCCGTTGGATCTACTATTGTTTTTCACATACATGGGGATTGTTGCTGGAAAGAGCGTCT CTCAAATACGGGAGGATATGAAGAGAGATTTCCTGCCAGCATTCATGATGGAAGGAGGGGTGTGGCCGATTGTTCAAGTGATAAACTTCCGTTTCGTGCC AGTGAAATATCAGTTATTGTATGTAAACTTATTCTGCTTGTTGGATAGTTGCTTCCTCTCGTGGTTGGAGCAACAACACAATGCTCCATGGAAGGCATGG CTGAATTCTCTACTACCTTTCCAAGGAGAAAAAGGGTGA
AA sequence Show only first row Show all	>Lus10038626 pacid=23143104 polypeptide=Lus10038626 locus=Lus10038626.g ID=Lus10038626.BGIv1.0 annot-version=v1.0 MFNFWKWFQHCLALHPVKTQMLSSGLIWGAGDIAAQSINNYTAQKPLVFQDDEIREKINWKRVATTSLFGFGFVGPVGHFWYEGLDRFMRSQLFRPNSLR FVGVKVAIDGFLFGPLDLLLFFTYMGIVAGKSVSQIREDMKRDFLPAFMMEGGVWPIVQVINFRFVPVKYQLLYVNLFCLLDSCFLSWLEQQHNAPWKAW LNSLLPFQGEKG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G24570			Peroxisomal membrane 22 kDa (M...		Lus10038626 [exp]	0	1
AT5G63220			unknown protein		Lus10040371 [exp]	18.8	0.6826
					Lus10005948 [exp]	33.6	0.6908
AT5G65660			hydroxyproline-rich glycoprote...		Lus10042928 [exp]	63.2	0.6919
AT3G52500			Eukaryotic aspartyl protease f...		Lus10029408 [exp]	95.5	0.6657
AT3G46510		ATPUB13	ARABIDOPSIS THALIANA PLANT U-B...		Lus10040834 [exp]	132.3	0.6491
AT1G19430			S-adenosyl-L-methionine-depend...		Lus10000716 [exp]	151.5	0.6641
AT1G53580		GLY3, GLX2-3, E...	GLYOXALASE 2-3, ETHE1-LIKE, gl...		Lus10007336 [exp]	232.2	0.6220
AT5G64530	NAC	ANAC104, XND1	Arabidopsis NAC domain contain...		Lus10035647 [exp]	253.5	0.6257

Compare expression of checked genes

Lus10038626 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.