Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G25590 504 / 2e-173 Protein of unknown function (DUF630 and DUF632) (.1) AT1G52320 434 / 9e-150 unknown protein AT1G02110 164 / 3e-44 Protein of unknown function (DUF630 and DUF632) (.1) AT3G51290 149 / 1e-38 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) AT4G39790 142 / 7e-37 Protein of unknown function (DUF630 and DUF632) (.1) AT2G27090 139 / 1e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT3G60320 138 / 5e-35 Protein of unknown function (DUF630 and DUF632) (.1) AT4G35240 127 / 2e-31 Protein of unknown function (DUF630 and DUF632) (.1), Protein of unknown function (DUF630 and DUF632) (.2) AT2G17110 121 / 2e-29 Protein of unknown function (DUF630 and DUF632) (.1) AT1G21740 120 / 4e-29 Protein of unknown function (DUF630 and DUF632) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037901 [exp] 627 / 0 AT5G25590 627 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10022116 [exp] 608 / 0 AT5G25590 753 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Lus10002864 [exp] 447 / 3e-158 AT5G25590 339 / 1e-111 Protein of unknown function (DUF630 and DUF632) (.1) Lus10035887 [exp] 458 / 3e-155 AT1G52320 747 / 0.0 unknown protein Lus10025777 [exp] 448 / 5e-152 AT1G52320 652 / 0.0 unknown protein Lus10000014 [exp] 292 / 7e-99 AT5G25590 209 / 3e-64 Protein of unknown function (DUF630 and DUF632) (.1) Lus10041884 [exp] 154 / 6e-42 AT3G51290 649 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10028431 [exp] 155 / 4e-41 AT3G51290 728 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Lus10024007 [exp] 149 / 6e-39 AT1G21740 238 / 1e-66 Protein of unknown function (DUF630 and DUF632) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036400 [exp] 580 / 0 AT5G25590 656 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.006G244100 [exp] 569 / 0 AT5G25590 603 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.003G054800 [exp] 465 / 9e-159 AT1G52320 626 / 0.0 unknown protein Potri.001G181100 [exp] 451 / 2e-153 AT1G52320 615 / 0.0 unknown protein Potri.009G137500 [exp] 171 / 1e-46 AT3G51290 228 / 4e-64 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.004G177200 [exp] 170 / 2e-46 AT1G21740 225 / 2e-62 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G112300 [exp] 168 / 6e-46 AT3G51290 576 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.007G056700 [exp] 163 / 3e-44 AT3G51290 545 / 0.0 Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.1), Protein of unknown function (DUF630) ;Protein of unknown function (DUF632) (.2) Potri.014G047400 [exp] 147 / 3e-38 AT3G60320 862 / 0.0 Protein of unknown function (DUF630 and DUF632) (.1) Potri.005G108400 [exp] 138 / 5e-35 AT1G21740 231 / 4e-64 Protein of unknown function (DUF630 and DUF632) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04782 [flax] [poplar] DUF632 Protein of unknown function (DUF632)
Representative CDS sequence Show only first row Show all	>Lus10038627 pacid=23143005 polypeptide=Lus10038627 locus=Lus10038627.g ID=Lus10038627.BGIv1.0 annot-version=v1.0 ATGCCGGAAGCCAAGGGCATGGCTTGGGATTATTTCTTTATGATGGAAAATATGCCTGGCTCCACCCTAGAGGAAGAAGAAGAAGAAGAAGAAGATGATG ATGCAAATGAGAATCACGATTTCGTCGACGAACCGAAGACGCCGGAGATGGCGGCGGAGAAGATGAAGCCGTCGGCGGCGGCGGTGGTAGCAGAAGAAGA AGACGAAGAAGAAGAAGAAGAAGAAGAAGAAGGGGTTAGTAAAGGGAAGCAGCAGATTGAACATTCACAAACGGCGCCGGCGGATTTGATGAGGGGGAAC AAGGTTGGGAGTGTAGATTTGATGGATGTTTTAGGTCAGATTGACGATCATTTCCTCAAGGCTTCTGAGGCTGCTCAGGACGTATGCAAGATGCTGGAAG CCACTCGCCTCCATTACCATTCCAATTTTGCAGACACTCGAGGGCACATTGATCATTCTGCAAGAGTTATGCGCGTGATCACTTGGAATAAATCTTATAA TACAACCAGCGATGGAGAAGGAGGCAGAGATGACTTGGATTCCGAGGATTACGAAACTCATGCCACTGTTTTGGATAAGTTGTTGGCCTGGGAAAAGAAA CTCTTTGATGAAGTCAAGCAAGGAGAGTTGATGAAGCTGGAGTACAAAAGGAAGGTTGCTTTGCTGAACAAGCAGAAGAAACGTGGTGCTAGTGCTGACT CCTTGGAAAAGACTAAAGCGGCCGTGAGTCATTTGCACACTGGATATATTGTTGATATGCAATCTATGGACTCAACTGTTGCTGAAGTTAATCACATACG CGATAACCAGTTGTATCCTAAACTTGTTGCTCTTGTCCAAGGGATGTCGAAGATGTGGGGGAACATGTCGATCCACCACGAAAGCCAGCTAAAGATTGTA ATGGACCTTAAAACGCTTGATGTCGCCCATGCCATTAAAGAAACAACGAGGCACCACCACGAACAGACCAGCCAACTATGTGATGTTGTCGAGAAATGGA ATGCACAGTTCGATAAGCTTGTGACGTATCAAAAGCAATACATCAATTGTCTCAATAGCTGGTTAAAGCTAAACCTCATCCCCATAGAAAGCAGCTTGAA AGAGAAGATATCATCCCCGCAACGAGTCGTGAATCCCCCAATCCAACCCCTTCTTCATGCATGGCACGACCATCTCGAAAGGCTACCAGACGAGCTTGCC AAAACTGCAATCTCTTCTTTCGAGGCCGTGATCAGAACCATTAAAGTACACCAAGAAGAAGAGATGAAGCTAAAGGAGAGATGTGAAGAAACTAGAAAGG AGTATGATTGA
AA sequence Show only first row Show all	>Lus10038627 pacid=23143005 polypeptide=Lus10038627 locus=Lus10038627.g ID=Lus10038627.BGIv1.0 annot-version=v1.0 MPEAKGMAWDYFFMMENMPGSTLEEEEEEEEDDDANENHDFVDEPKTPEMAAEKMKPSAAAVVAEEEDEEEEEEEEEGVSKGKQQIEHSQTAPADLMRGN KVGSVDLMDVLGQIDDHFLKASEAAQDVCKMLEATRLHYHSNFADTRGHIDHSARVMRVITWNKSYNTTSDGEGGRDDLDSEDYETHATVLDKLLAWEKK LFDEVKQGELMKLEYKRKVALLNKQKKRGASADSLEKTKAAVSHLHTGYIVDMQSMDSTVAEVNHIRDNQLYPKLVALVQGMSKMWGNMSIHHESQLKIV MDLKTLDVAHAIKETTRHHHEQTSQLCDVVEKWNAQFDKLVTYQKQYINCLNSWLKLNLIPIESSLKEKISSPQRVVNPPIQPLLHAWHDHLERLPDELA KTAISSFEAVIRTIKVHQEEEMKLKERCEETRKEYD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G25590			Protein of unknown function (D...		Lus10038627 [exp]	0	1
AT5G25590			Protein of unknown function (D...		Lus10002864 [exp]	1.4	0.9418
AT5G25590			Protein of unknown function (D...		Lus10000014 [exp]	2.0	0.9371
AT4G24660	ZF_HD	ATHB22, MEE68, ...	ZINC FINGER HOMEODOMAIN 2, MAT...		Lus10009265 [exp]	4.9	0.9085
AT5G48720		XRI1, XRI	x-ray induced transcript 1 (.1...		Lus10038181 [exp]	5.5	0.8527
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	5.7	0.8867
AT4G34940		ARO1	armadillo repeat only 1 (.1)		Lus10025059 [exp]	6.4	0.8080
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	8.9	0.8810
AT4G13640	GARP	UNE16	unfertilized embryo sac 16, Ho...		Lus10007132 [exp]	9.5	0.8772
AT2G45850	AT-hook		AT hook motif DNA-binding fami...		Lus10037858 [exp]	10.2	0.8605
AT5G56810			F-box/RNI-like/FBD-like domain...		Lus10026195 [exp]	14.8	0.8333

Compare expression of checked genes

Lus10038627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.