Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G11470 182 / 5e-49 bromo-adjacent homology (BAH) domain-containing protein (.1) AT3G15605 119 / 2e-28 nucleic acid binding (.1.2.3.4) AT4G19020 50 / 4e-06 CMT2 chromomethylase 2 (.1) AT3G43990 46 / 5e-05 Bromo-adjacent homology (BAH) domain-containing protein (.1) AT1G80740 44 / 0.0004 DMT4, CMT1 DNA METHYLTRANSFERASE 4, chromomethylase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037903 [exp] 951 / 0 AT5G11470 183 / 1e-49 bromo-adjacent homology (BAH) domain-containing protein (.1) Lus10017720 [exp] 44 / 0.0005 AT1G69770 855 / 0.0 chromomethylase 3 (.1) Lus10026024 [exp] 43 / 0.0006 AT1G69770 824 / 0.0 chromomethylase 3 (.1) Lus10014315 [exp] 43 / 0.001 AT1G69770 836 / 0.0 chromomethylase 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G036500 [exp] 402 / 3e-134 AT5G11470 209 / 6e-59 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.006G244000 [exp] 380 / 2e-124 AT5G11470 373 / 1e-119 bromo-adjacent homology (BAH) domain-containing protein (.1) Potri.001G174700 [exp] 173 / 6e-49 AT3G15605 150 / 2e-41 nucleic acid binding (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01426 [flax] [poplar] BAH BAH domain
Representative CDS sequence Show only first row Show all	>Lus10038628 pacid=23143055 polypeptide=Lus10038628 locus=Lus10038628.g ID=Lus10038628.BGIv1.0 annot-version=v1.0 ATGCACCGAAATGAAGAAGGATGCACCGGATTCCGATGGACTTCAGAGCGAAGACTTGGTGGAAAGAATAAGAACATCTCGTTCTATGAGTCTTTTGTCT ATGAAGGGGAGGAGTATAGACTGTATGACTCGGTATATGTTTACACAAAAGATGAGGATGAGCCTGAAATTGGGAAGCTGGTAAATGCCTGGGAAACAGC CGATGGGGTAAAAAGAGCTAGGATCTTGTGGTTTTTTCGCCCTCGTGATATAGCTAATCACTTCAAAGGGGAAAATCATAAGAATGAATTGTTTCTAGCA GCTGGTGAAGGGAAAGGGCTTCTAAATAACAATCCCTTGGAAACTATTGCTGGGAAATGCAATGTTATTTGCACTTCAAGAGACAGCAGAAATCCTCAAC CCTCCAAAGAAGAAATTACTGGTGCAGACTTCGTGTTCAGCCGTTGCTTTGATGTTGGTCAATGCAAGATATTGGAGAAGATGGTTGAGAAAATTGCTGG AATTGACGTCAAATTTTTGTTTAATCGCAAGCATAGGGAGGCACCTCTTGGTGTTTCAAATTCCGGGTCAAAGAGAAAGGAAATTGTAGATATGGATCCT CGTTCCATTGGTTCATCTTTGCGGGAGAATCCTGCCACTACTCTAGGATTAAGTGTTGATAATATGGAGGCCGATCATACTACCAAACTTGGTGAGATGG GTCGTAACCCATCTTTTGCTTGTACCAACAATGCCAAGAGGTCTATCTCTCCTACACAAACTATGGAGAATTTTAAAATTGCAAAGCATGCACACGGGAG GAAGGAAGGTCTAAAGCAAAATGAAAGCACCTTGGATAACTCTAAAATTTCGAAGGATACACACGAGGGGAAGGAAGGTCTAAAACAAAATGAATGCACC ATGGAGAACTCTAAAAGTGCAAAGGATGTACTGGGGAGGAGGGAAGGTCTAAAGCAAAATGAGCGCTCTCGTAATTCTGGTTACACTAGCAATACCAAGA GGCCCATCTCCCCCACTGTGAAGGATCTACACGGGAGTGAAGAGAGTCCTAAGAGGCAAAAACTTGATGCAGAGCTTGGTAGGCTGGTTAATGCAAAGTT GCCTAAGCCTTCTCAAGTCCATTCCTCCAATGCTAGCGAAAGGATTGATACTCGAGTGTCTGAGATGCCTGTCATTCTTTGGGAAGAAGAGATGAAAGCT GGGTATGAAGATGGAAGTCTTGTTCTTCTTCTTAACTTGAATCCATCATACACTTCGGTTGAAGTGCAGGAGTTGATAAAGGATTCTTGTATGGAAACCT GTACAGCAAAGATGGTTCAGCGGACAGCTTTTTCTAATCCTCACTCTGGTAAAGCTTTCGTCAAGTTCATGTCAAAGGAAGTAGCCGAGAGGGTTATTTT GAAGTTGACTGAAGGTTGTCTGTTGTTACCTGGTGGAAGGTCTGTTGTGGGCAGGATTATGACTAGTGGTTTTAAAGGAAAGCAGTTACCATTCTACGGT CATTTTGGTATTGATAAACTCAAACACCAAATGCAGCGAAACAAGAAATCGGCAGTGTCTACCTCACATTGCTCTCAGCCGAATACGATTGAGTATGAAA TGGCTTTGGAATGGTGCTTACTACAAGCAAAGATGCAAAAAACTTGGGAATCCGTGCACAGGAACGGATTGTTTTCCTCTACTGATCATAATGACTTGTT GAACCTTCAGCAACATGGTGATGATCTGAAGAAACTCAAGGATCGTCTTACGTCAACACTAAAGGCAAAATGA
AA sequence Show only first row Show all	>Lus10038628 pacid=23143055 polypeptide=Lus10038628 locus=Lus10038628.g ID=Lus10038628.BGIv1.0 annot-version=v1.0 MHRNEEGCTGFRWTSERRLGGKNKNISFYESFVYEGEEYRLYDSVYVYTKDEDEPEIGKLVNAWETADGVKRARILWFFRPRDIANHFKGENHKNELFLA AGEGKGLLNNNPLETIAGKCNVICTSRDSRNPQPSKEEITGADFVFSRCFDVGQCKILEKMVEKIAGIDVKFLFNRKHREAPLGVSNSGSKRKEIVDMDP RSIGSSLRENPATTLGLSVDNMEADHTTKLGEMGRNPSFACTNNAKRSISPTQTMENFKIAKHAHGRKEGLKQNESTLDNSKISKDTHEGKEGLKQNECT MENSKSAKDVLGRREGLKQNERSRNSGYTSNTKRPISPTVKDLHGSEESPKRQKLDAELGRLVNAKLPKPSQVHSSNASERIDTRVSEMPVILWEEEMKA GYEDGSLVLLLNLNPSYTSVEVQELIKDSCMETCTAKMVQRTAFSNPHSGKAFVKFMSKEVAERVILKLTEGCLLLPGGRSVVGRIMTSGFKGKQLPFYG HFGIDKLKHQMQRNKKSAVSTSHCSQPNTIEYEMALEWCLLQAKMQKTWESVHRNGLFSSTDHNDLLNLQQHGDDLKKLKDRLTSTLKAK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G11470			bromo-adjacent homology (BAH) ...		Lus10038628 [exp]	0	1
AT1G72640			NAD(P)-binding Rossmann-fold s...		Lus10000373 [exp]	3.3	0.8775
AT4G01690		PPOX, HEMG1, PP...	Flavin containing amine oxidor...		Lus10007194 [exp]	4.9	0.8718
AT1G62680			Pentatricopeptide repeat (PPR)...		Lus10042220 [exp]	5.2	0.8533
AT2G44710			RNA-binding (RRM/RBD/RNP motif...		Lus10033990 [exp]	6.0	0.8339
AT5G18570		EMB3138, ATOBGL...	EMBRYO DEFECTIVE 3138, EMBRYO ...		Lus10006128 [exp]	6.9	0.8617
AT1G78910			Pseudouridine synthase family ...		Lus10034804 [exp]	8.5	0.8549
AT5G11580			Regulator of chromosome conden...		Lus10038724 [exp]	9.8	0.8708
					Lus10006129 [exp]	10.2	0.8620
AT2G46090			Diacylglycerol kinase family p...		Lus10036388 [exp]	10.5	0.8526
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10000213 [exp]	10.6	0.8359

Compare expression of checked genes

Lus10038628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.