Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G24480 332 / 2e-110 Leucine-rich repeat (LRR) family protein (.1) AT4G13340 335 / 1e-108 LRX3 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) AT5G25550 303 / 3e-100 Leucine-rich repeat (LRR) family protein (.1) AT4G18670 315 / 5e-100 Leucine-rich repeat (LRR) family protein (.1) AT1G62440 295 / 1e-92 LRX2 leucine-rich repeat/extensin 2 (.1) AT1G12040 284 / 3e-89 LRX1 leucine-rich repeat/extensin 1 (.1) AT3G22800 275 / 1e-88 Leucine-rich repeat (LRR) family protein (.1) AT2G15880 271 / 1e-84 Leucine-rich repeat (LRR) family protein (.1) AT3G19020 275 / 3e-84 Leucine-rich repeat (LRR) family protein (.1) AT4G33970 266 / 5e-83 Leucine-rich repeat (LRR) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037905 [exp] 543 / 0 AT4G13340 432 / 9e-149 leucine-rich repeat/extensin 3, Leucine-rich repeat (LRR) family protein (.1) Lus10017727 [exp] 329 / 8e-107 AT3G24480 611 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Lus10039362 [exp] 270 / 1e-87 AT3G22800 416 / 2e-143 Leucine-rich repeat (LRR) family protein (.1) Lus10028097 [exp] 272 / 1e-86 AT1G62440 466 / 7e-157 leucine-rich repeat/extensin 2 (.1) Lus10006611 [exp] 260 / 1e-83 AT3G22800 434 / 3e-150 Leucine-rich repeat (LRR) family protein (.1) Lus10039363 [exp] 259 / 3e-81 AT3G22800 447 / 1e-152 Leucine-rich repeat (LRR) family protein (.1) Lus10033672 [exp] 253 / 5e-81 AT4G28380 488 / 6e-173 Leucine-rich repeat (LRR) family protein (.1) Lus10012047 [exp] 258 / 5e-80 AT3G19020 508 / 6e-172 Leucine-rich repeat (LRR) family protein (.1) Lus10027935 [exp] 251 / 6e-77 AT1G49490 538 / 6e-180 Leucine-rich repeat (LRR) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G245600 [exp] 351 / 3e-117 AT3G24480 516 / 3e-180 Leucine-rich repeat (LRR) family protein (.1) Potri.006G158814 [exp] 328 / 2e-108 AT3G24480 614 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G075900 [exp] 329 / 4e-107 AT3G24480 603 / 0.0 Leucine-rich repeat (LRR) family protein (.1) Potri.018G035100 [exp] 322 / 3e-105 AT3G24480 483 / 4e-166 Leucine-rich repeat (LRR) family protein (.1) Potri.006G081200 [exp] 305 / 2e-96 AT1G62440 553 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.018G151000 [exp] 297 / 2e-96 AT1G62440 533 / 0.0 leucine-rich repeat/extensin 2 (.1) Potri.010G083000 [exp] 280 / 2e-91 AT3G22800 477 / 7e-167 Leucine-rich repeat (LRR) family protein (.1) Potri.010G083100 [exp] 265 / 5e-86 AT3G22800 447 / 2e-156 Leucine-rich repeat (LRR) family protein (.1) Potri.014G036700 [exp] 268 / 1e-84 AT2G15880 502 / 1e-170 Leucine-rich repeat (LRR) family protein (.1) Potri.004G146350 [exp] 269 / 5e-83 AT2G15880 600 / 0.0 Leucine-rich repeat (LRR) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat
Representative CDS sequence Show only first row Show all	>Lus10038631 pacid=23143132 polypeptide=Lus10038631 locus=Lus10038631.g ID=Lus10038631.BGIv1.0 annot-version=v1.0 ATGGATTGTGATGAAAACCACCATTATGACGTCGTCGACACACCCCCATTCAAATTCGAAAACCCTAGGCTGGAAACAGCCTACTTCGCCCTTCAAACAT GGAAACACGCCATCCTGTCCGACCCTTACAGCCGAACCGCCAATTGGATAGGCTCCGACCTCTGCAACTACACTCGCATTTTCTACTGGCCCGCCCCTGA CAATGCCACCGTCGCTGGGATCGACCTCAATCATGCTGACATCACTGGTCAATTGGTCAACGAGCTCGCCCTCCTTACCGATTTAGCCCTGATTCACCTC AACACCAATAGATTATGCGGCACCGTTCACACGACATTCAAGATGCTCAAAGTTCTCCACGAGCTCGACCTCAGCAACAACCGATTCGTTGGGAAATTCC CTTGCTCTGTTCTCGAAATCCCCAAGCTCAAGTATCTGGACATCCGGTTCAACGAATTCGAAGGCCGGATCCCTAAGAGGCTTTTCAACAAAGACCTCGA AGCCATTTTCATCAACCATAACAGCTTCGCCTCCCACCTGCCGGAGAACATCGGTAATTCCCCTGCCTCAGTCATGGTCCTCGCCGAGAACAAGTACCAC GGCTGCCTTCCACCGAGCTTCCGGAACATGTCGGCGACGCTCAATGAAGTGATCCTGACGGACAACGGGATGCACGCGTGTCTGCCGGAGGAGATCGGTT CGCGGAAGAACCTGACGGTTTTCGACCCCAGTAATAAAGGGGAGATTCCCGAGGCGATCTGCTCGCTCCCTAAGCTGTGGAATTTCACGGCGTCGTCTAA CTTCTTTGATGAGGAGGCCCGTGAGTGCCGGAGTTTGGAGGAGTTCAATGATGGACGGAATTGTTTAAAGGATCGGCGGAATCAGCAATCGCGTTGGCAG TGTGAGATGTTTCAGTCCAGGCCTAAGGTTAGGTGTGAGGATCACCAGTGTTTTAAGCCGCCGCGGCCATGTGAGGCTATTCCCCCTCCGCCACCACTTA CGCCTCCAGTTCCTTGCGCATATGATAACTCGAATAGGACGGAGGAGGATGGTCAGGACCCTCAATCTCAGATCCAGACTCCGCCGAGACAGTTGTTATC ACGACCGTAA
AA sequence Show only first row Show all	>Lus10038631 pacid=23143132 polypeptide=Lus10038631 locus=Lus10038631.g ID=Lus10038631.BGIv1.0 annot-version=v1.0 MDCDENHHYDVVDTPPFKFENPRLETAYFALQTWKHAILSDPYSRTANWIGSDLCNYTRIFYWPAPDNATVAGIDLNHADITGQLVNELALLTDLALIHL NTNRLCGTVHTTFKMLKVLHELDLSNNRFVGKFPCSVLEIPKLKYLDIRFNEFEGRIPKRLFNKDLEAIFINHNSFASHLPENIGNSPASVMVLAENKYH GCLPPSFRNMSATLNEVILTDNGMHACLPEEIGSRKNLTVFDPSNKGEIPEAICSLPKLWNFTASSNFFDEEARECRSLEEFNDGRNCLKDRRNQQSRWQ CEMFQSRPKVRCEDHQCFKPPRPCEAIPPPPPLTPPVPCAYDNSNRTEEDGQDPQSQIQTPPRQLLSRP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G13340		LRX3	leucine-rich repeat/extensin 3...		Lus10038631 [exp]	0	1
AT4G18160		KCO6, ATTPK3, A...	Ca2+ activated outward rectify...		Lus10004538 [exp]	29.4	0.5998
AT5G11160		APT5	adenine phosphoribosyltransfer...		Lus10002924 [exp]	41.7	0.5745
AT1G71820		SEC6	SEC6 (.1.2)		Lus10036425 [exp]	43.4	0.5592
AT1G08370		DCP1, ATDCP1	decapping 1 (.1)		Lus10021331 [exp]	81.3	0.5375
AT1G22710		SUT1, ATSUC2, S...	SUCROSE TRANSPORTER 1, ARABIDO...		Lus10022633 [exp]	180.6	0.5369

Compare expression of checked genes

Lus10038631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.