Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06330 328 / 4e-109 RING/U-box superfamily protein (.1.2.3) AT5G18760 274 / 2e-88 RING/U-box superfamily protein (.1) AT5G60580 191 / 1e-55 RING/U-box superfamily protein (.1.2.3.4) AT3G09760 191 / 1e-55 RING/U-box superfamily protein (.1) AT5G03180 187 / 2e-54 RING/U-box superfamily protein (.1.2) AT1G14260 59 / 1e-09 RING/FYVE/PHD zinc finger superfamily protein (.1.2) AT5G38070 57 / 7e-09 RING/FYVE/PHD zinc finger superfamily protein (.1) AT5G08750 56 / 3e-08 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) AT4G34100 56 / 3e-08 RING/U-box superfamily protein (.1.2) AT4G32670 55 / 8e-08 RING/FYVE/PHD zinc finger superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037906 [exp] 622 / 0 AT3G06330 232 / 1e-71 RING/U-box superfamily protein (.1.2.3) Lus10012791 [exp] 491 / 1e-172 AT3G06330 388 / 3e-132 RING/U-box superfamily protein (.1.2.3) Lus10033985 [exp] 489 / 1e-166 AT3G06330 384 / 7e-126 RING/U-box superfamily protein (.1.2.3) Lus10012793 [exp] 208 / 1e-64 AT3G06330 192 / 8e-61 RING/U-box superfamily protein (.1.2.3) Lus10021482 [exp] 194 / 1e-56 AT5G60580 469 / 6e-163 RING/U-box superfamily protein (.1.2.3.4) Lus10037410 [exp] 194 / 4e-56 AT5G60580 506 / 2e-176 RING/U-box superfamily protein (.1.2.3.4) Lus10022585 [exp] 191 / 2e-55 AT5G60580 474 / 1e-164 RING/U-box superfamily protein (.1.2.3.4) Lus10041301 [exp] 190 / 1e-52 AT2G28450 878 / 0.0 zinc finger (CCCH-type) family protein (.1), zinc finger (CCCH-type) family protein (.2) Lus10026501 [exp] 182 / 7e-52 AT3G09760 414 / 5e-140 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014950 [exp] 395 / 4e-135 AT3G06330 409 / 5e-141 RING/U-box superfamily protein (.1.2.3) Potri.010G014800 [exp] 390 / 2e-133 AT3G06330 409 / 8e-141 RING/U-box superfamily protein (.1.2.3) Potri.008G196400 [exp] 388 / 2e-132 AT3G06330 377 / 3e-128 RING/U-box superfamily protein (.1.2.3) Potri.006G024000 [exp] 206 / 5e-61 AT5G60580 361 / 4e-120 RING/U-box superfamily protein (.1.2.3.4) Potri.016G022900 [exp] 205 / 7e-61 AT5G60580 337 / 7e-111 RING/U-box superfamily protein (.1.2.3.4) Potri.009G013300 [exp] 198 / 6e-58 AT5G60580 492 / 3e-171 RING/U-box superfamily protein (.1.2.3.4) Potri.006G129000 [exp] 185 / 5e-53 AT3G09760 381 / 7e-128 RING/U-box superfamily protein (.1) Potri.004G093500 [exp] 58 / 3e-09 AT2G01275 238 / 9e-79 RING/FYVE/PHD zinc finger superfamily protein (.1.2) Potri.001G304100 [exp] 57 / 1e-08 AT4G34100 1553 / 0.0 RING/U-box superfamily protein (.1.2) Potri.008G127400 [exp] 56 / 1e-08 AT2G01275 266 / 1e-89 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10038632 pacid=23143065 polypeptide=Lus10038632 locus=Lus10038632.g ID=Lus10038632.BGIv1.0 annot-version=v1.0 ATGCAACCTGCTGCTCATTCTCAGCCGTTAGTCAGCAATGGCGCACCTGCACATTCAGACGCTCCTTCTTCTTCTTCTTCACAGGCTCATTTGGAAAACG GGAGACAATGTGGTGACGAGGTTGGAAGAACAGGACCAAGGACTGATCTTTCTCTTCAAATACCAGCTAGACAAGTGAACTTAGGGGCTAGGCGCAATGG CAAAGGATTAATGAAATCTCAAACAACATTCAGACGGCTTCAGCGGGCATTAAGCTTCAGGAAGAGAAATGGTGAGAGGATTTGTCTGCTCAACTCAGAC AACTACTCACAACCTTCTCCAGTTAGTCCTATGATCATAGCCAATCTCAAGTCTGCATTTTCCAGATGCATCTCACTTCCACCTGCATTGCCTTGGTCAC CCAACGCCCTACTTCCCACAAGGCCTGACTCAGCTCGATTGCCTGACCAATTTCATGAAATGGAGGCAGCTGTAGTTTCAAGGTCTCTATCTGCTCCTGA GCGAAACGTTGTCATCGTGAGGTCTGCATCTTTCGCTGCTCCTAGACACAAGCCCTATGGTGGTAGGTCGTCGTGTTTATGTGACAACGCAGCTCAAATA TCTATAGATGAGAATGAAGAGGATGAGGATGAAGAAATCCCAGAAGAGGAGGCAGTATGCAGGATCTGTCTTGATGCATGTGAAGAAGAAAACACACTCA AAATGGAATGCGGGTGCAGAGGGGACCTCCGACTGGTACATGAATCATGTGCAGTTAAGTGGTTTAGCACAAAAGGAAACAGAATCTGTGAAGTGTGTCG TCAAGAAGTTAACAACTTGCCTGTGATCTTATTTCGAGTAACTAGTTATGCCCAATTCAGTGATAGACAGTCACCGGGTGGACAGAGCTTCAGGGCACAA CAAATAAGTGCCTGGCAGGACTTTGTTGTGCTGTTCCTGATTAGCACAACATGCTATTTCTTCTTCCTGGAGCAGTTATTGATTGATGACATGAAGACGC GGGCAATCGTAGTTGCAGCACCATTTGCATTGGCCTTAGGCGTTATGGCATCCATATTTGCGGCCATGCTAACTATTCGAGAATTCATATGGACTTACGC TGCTCTGGAGTTTGCACTTGTAGCAGTAATAGTGCACCTTTTCTATAAAGTACTTGATTTGGATGTGATATACGCAATACTGGTAGCAGCAGTATTGGGG TTTGGAATAGCTATGAGCCTCAACACATTGTACATTCAGTACTTCATCTGGCGGGCTCAAAACTCCACCTTCACCGCTCCCCCTGTCTGA
AA sequence Show only first row Show all	>Lus10038632 pacid=23143065 polypeptide=Lus10038632 locus=Lus10038632.g ID=Lus10038632.BGIv1.0 annot-version=v1.0 MQPAAHSQPLVSNGAPAHSDAPSSSSSQAHLENGRQCGDEVGRTGPRTDLSLQIPARQVNLGARRNGKGLMKSQTTFRRLQRALSFRKRNGERICLLNSD NYSQPSPVSPMIIANLKSAFSRCISLPPALPWSPNALLPTRPDSARLPDQFHEMEAAVVSRSLSAPERNVVIVRSASFAAPRHKPYGGRSSCLCDNAAQI SIDENEEDEDEEIPEEEAVCRICLDACEEENTLKMECGCRGDLRLVHESCAVKWFSTKGNRICEVCRQEVNNLPVILFRVTSYAQFSDRQSPGGQSFRAQ QISAWQDFVVLFLISTTCYFFFLEQLLIDDMKTRAIVVAAPFALALGVMASIFAAMLTIREFIWTYAALEFALVAVIVHLFYKVLDLDVIYAILVAAVLG FGIAMSLNTLYIQYFIWRAQNSTFTAPPV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06330			RING/U-box superfamily protein...		Lus10038632 [exp]	0	1
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10033805 [exp]	19.1	0.8164
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10027383 [exp]	23.7	0.7515
AT5G13480		FY	Transducin/WD40 repeat-like su...		Lus10026837 [exp]	25.1	0.8054
AT3G63240			DNAse I-like superfamily prote...		Lus10042620 [exp]	31.7	0.8106
AT1G69170	SBP	SPL6	Squamosa promoter-binding prot...		Lus10007984 [exp]	47.9	0.8008
AT5G04620		BIO4, ATBIOF	biotin 4, biotin F (.1.2)		Lus10009024 [exp]	59.5	0.7942
AT3G15620		UVR3	UV REPAIR DEFECTIVE 3, DNA pho...		Lus10022095 [exp]	73.6	0.7703
AT3G04690		ANX1	ANXUR1, Malectin/receptor-like...		Lus10037768 [exp]	101.1	0.7616
AT4G33760			tRNA synthetase class II (D, K...		Lus10037243 [exp]	102.5	0.7367
AT5G22220	E2F_DP	ATE2FB, E2F1	E2F transcription factor 1 (.2...		Lus10005209 [exp]	110.4	0.7298

Compare expression of checked genes

Lus10038632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.