Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21480 291 / 1e-82 BRCT domain-containing DNA repair protein (.1) AT4G03130 197 / 2e-52 BRCT domain-containing DNA repair protein (.1) AT2G41450 55 / 3e-07 N-acetyltransferases;N-acetyltransferases (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037907 [exp] 1744 / 0 AT3G21480 323 / 3e-94 BRCT domain-containing DNA repair protein (.1) Lus10033984 [exp] 841 / 0 AT3G21480 301 / 3e-86 BRCT domain-containing DNA repair protein (.1) Lus10012794 [exp] 216 / 4e-63 ND / Lus10012790 [exp] 171 / 2e-46 AT3G21480 112 / 1e-26 BRCT domain-containing DNA repair protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014700 [exp] 364 / 3e-108 AT3G21480 366 / 4e-109 BRCT domain-containing DNA repair protein (.1) Potri.014G135520 [exp] 248 / 1e-68 AT4G03130 284 / 2e-83 BRCT domain-containing DNA repair protein (.1) Potri.006G045100 [exp] 63 / 7e-10 AT2G41450 487 / 2e-167 N-acetyltransferases;N-acetyltransferases (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038633 pacid=23143060 polypeptide=Lus10038633 locus=Lus10038633.g ID=Lus10038633.BGIv1.0 annot-version=v1.0 ATGGTCTGTACTGCAGACGACGGTGGCGATGCGGTTCGACCAGTGGAGGACAACTCAACAGCCGCCGATTCTCAGCCTTTCAATTCAGATTGGTCTGCTT CTTCCTCGCCAGGAGAAAATGTTGGATATGATGATCACGTCTTCGTGTATAAGAGAAAGGTTTCCTTTGATGGTGCTGTTCCAGTTCAAGATATAGTTGA GACCCAAGTAGTGAACTACGGGGATGAAACACAAGCTCTGGATGATCCAGATTTCGTTGGAAGTATGGCCACACAGATGATTGATGAGTTCAGTGAACAT GTGGTTCTTGATAGTGAGGATGAATGTAGTGACACTACAGAAATTTTGGGTACCGGTGATGTGCTTTCAGATAATGATGGTGAAGCATTAGCGGAGGTCG AGGTTCATTGCCCTTCTTACTATAATTCTAAAGATAAGCAGTCTGTCGATCAAACAAATGCTTCCTCAAACTTTCGAGTCAATTCAGTTAGAATAAAAGC ACTGCGTTCTTCTGCTTTAGCAGCTCAGGGAAATGCCCTGGAGAATTCCGGCAATGGTTTTTGTTCAAACCTGAACTGCAGTCATTCCCAGACAAAGCAA CTAACTTCTTGTGATGAAATAGTTAAGGATTCTAACGCAGGGGAAAACATTAACAAAGAGAAGGAACCGGATTGCGGGATCAGGTCCAAGGTTGATTCTT CAACAGTAAGAAGGCTGTTTACTGTTGATTCAATTGCTAAAGATGTTGGTATCAGTCATACTAGTAGCATAACTGGAGCAAAAGAAATCATCCAGCCACT CACTATTAATGAGGAGTTGGCAGGGTTGAGTTATGTAGACTCGCAAGAGCCTGGTGATGCATCACAAGCTGATGCACTTGCATTTGTGGAAAGGTTAATT GACGAGACTAAAACCTCATTTGATGACGAGGTAAGTCCTGGAAGCTGTGGCGGTAGAAAGTCCAGTTGCCTACCAACTGCAAAAGGTCCTCAAAGTTTAG CCAAGAAAACCATCAAACGGAACATTGGTGGTACAACTGGGATTTTTGACTGGGATGACAGTCTGGAGGATGAGGGAGGCGGAGATATATTCATAAGAAG AAAGGACGACTTTTTGGGTGTCAAAGAACCTGGCAAGTCTTTCACAGATCACCTGAAAGGCAGATCAAACACACTGACGGTATGCAGAGGCAATAAAAAA AAGTGGGGAGGCGCAATACACTCTGGTTCCAAAATAGTGGTTCGGAAGTGCAAGGTAACTGAGAATAAAAAAGAGGGAACTTTGAGGGATACCAGAAAAG ACCTTCTTGATGACTTTCATGAACAAGCTAATAGGAATCTCAACGAACCAACCGGACAGCCTGAAGCAGCTGTAGCTCCAAAAAATTGTGATGTGGGCTT GGACACCCAGTTAGCTGCTGATGCCATGGAAATTTTACTAAACGCGGACCCTCTTCCTGACCATGATGGCAGTGGTGCGAAGGAAAAGCACTCTGCGCTA CAATGTAATGACAGTGATGGCATTGGAGTGAACACTAGGCAATTGAAGAAAAGAAGGAAGAATGATGTTATTAAAGCTGTCCAGACGAGTGTCTCTTCTC CTAAACAATCCAACAAGGTTGTCTTGGAGCGTGATGCAGGTCCAGTACTGATGACGAGGAGGAGAGTGATATCTGATGGAGTTGAACTATCAATATGTCG TGGCAAAAAATCCATAGGGATGACGAAGAGGAGGGTGAGGCCGGATTCAGATGAATGCTCTATTCCTCGTGACCAGAAAACCCTGAAAGTGCTTCCATCC AAGACAAGTGAGCCAAAACATAGAGAGGCAACTCTGGGTCTCCAACTTGATTCGTCGAACAACTGTAAAGTGCCTTCTTTAAGAAGAGGACGGTCAGCTA AGATAAAGTCGCCACCTGAGGAGGTTGCCGATCATACAACAATAGCTCGCCGTACAAGAACATCTTTTGTGGTTTCTCCTTTGGCTGGGAATGAACCTGC TGAAGTCGATGAACACAAGGACCATACAAAGGATGAGAATGGGCTTGACCAGAGTCGAGCTGACACAGTTGACGAGGAGGCTGTTGAAGCCTCGTTTGTG GTTTCTCCTTTGGCTGGGAATGAACCTGCTGAAGTCGATGAACACAAGGACCATACAAAGGATGAGAATGGGCTTGACCAGAGTCGAGCTGACACAGTTG ACGAGGAGACTGTTGAAGCCTCAAATGCTGTACGGCTGACTTCCAGTAAATCTGAAAAGCCAGTGCCTGTAACACCAGAGAAGATGTTGAAGGGAGTAAT CGAAGCGTCCATTTCAGCGTCTGCTTCACCAGTTGGCTCTGTGACTACAAATGCTACATCGCCTGTTTGTATTGGTAACGGACTGGGCAAGAACAACCTT GCCAAAACTTCTCTGAGGGAGATTAATAACCTATGCAGCATAGACCTAGAACCTATTCCAAAAGTGAAAGATTCAAGAAAGAGGAGAAATTTGACTGATG TCCGGGTCATATTCAGCCGCCACCTGAAGGAGGATGTTTTTAAGCGCCAGAAAAAGCTTTTGGATCGTTTAAACGTCTCAATGGCTTCCTCTATTCTGGA CGCAACACATTTTGTTACAGATAGGTTTGTTCGAACAAGGAATATGTTAGAAGCAATTGCTGCTGGAAAGCCAGTAGTAACACCCTTGTGGCTTGAGCAT GTTGCACGAGCCAATTACTACATTGATGAGCAGAAATACTTACTAAGGGATGCAAATAAGGAAAAGGAGATAGGATTCAACATGGAAGTTTCATTAGCAC ATGCACGTCAGAATGCGCTTCTCCAGGGCCGAAAAGTTTTGATCACCCAAAATGCAAAGCCCAGTAAAGAGATCTTATGTAGTCTGGTTAAAGCAGTTCA TGGTCAACCAATTGAGAGAATAGGTAGATCTGCTCTGAAGGATGATTCATTAATCGATGACCTGTTGGTTTTATCTTGTGATGAAGATTATGAAGTCTGC GTTCCTTTGCTCGAAAGAGGGGCTGCTGCATACGTTTCAGAACTGCTACTGAACGCTATCGTTACACGGAAGCTAGAATACGACAGGCATAGGCTGTTTT CGGATCATGTGAAGAGGACCCGGTCGACTATACGGCTAAGAAAAGATGGGGAAAAGAATTTCACTCCTGTTGTGAAAAACACTTAA
AA sequence Show only first row Show all	>Lus10038633 pacid=23143060 polypeptide=Lus10038633 locus=Lus10038633.g ID=Lus10038633.BGIv1.0 annot-version=v1.0 MVCTADDGGDAVRPVEDNSTAADSQPFNSDWSASSSPGENVGYDDHVFVYKRKVSFDGAVPVQDIVETQVVNYGDETQALDDPDFVGSMATQMIDEFSEH VVLDSEDECSDTTEILGTGDVLSDNDGEALAEVEVHCPSYYNSKDKQSVDQTNASSNFRVNSVRIKALRSSALAAQGNALENSGNGFCSNLNCSHSQTKQ LTSCDEIVKDSNAGENINKEKEPDCGIRSKVDSSTVRRLFTVDSIAKDVGISHTSSITGAKEIIQPLTINEELAGLSYVDSQEPGDASQADALAFVERLI DETKTSFDDEVSPGSCGGRKSSCLPTAKGPQSLAKKTIKRNIGGTTGIFDWDDSLEDEGGGDIFIRRKDDFLGVKEPGKSFTDHLKGRSNTLTVCRGNKK KWGGAIHSGSKIVVRKCKVTENKKEGTLRDTRKDLLDDFHEQANRNLNEPTGQPEAAVAPKNCDVGLDTQLAADAMEILLNADPLPDHDGSGAKEKHSAL QCNDSDGIGVNTRQLKKRRKNDVIKAVQTSVSSPKQSNKVVLERDAGPVLMTRRRVISDGVELSICRGKKSIGMTKRRVRPDSDECSIPRDQKTLKVLPS KTSEPKHREATLGLQLDSSNNCKVPSLRRGRSAKIKSPPEEVADHTTIARRTRTSFVVSPLAGNEPAEVDEHKDHTKDENGLDQSRADTVDEEAVEASFV VSPLAGNEPAEVDEHKDHTKDENGLDQSRADTVDEETVEASNAVRLTSSKSEKPVPVTPEKMLKGVIEASISASASPVGSVTTNATSPVCIGNGLGKNNL AKTSLREINNLCSIDLEPIPKVKDSRKRRNLTDVRVIFSRHLKEDVFKRQKKLLDRLNVSMASSILDATHFVTDRFVRTRNMLEAIAAGKPVVTPLWLEH VARANYYIDEQKYLLRDANKEKEIGFNMEVSLAHARQNALLQGRKVLITQNAKPSKEILCSLVKAVHGQPIERIGRSALKDDSLIDDLLVLSCDEDYEVC VPLLERGAAAYVSELLLNAIVTRKLEYDRHRLFSDHVKRTRSTIRLRKDGEKNFTPVVKNT

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G21480			BRCT domain-containing DNA rep...		Lus10038633 [exp]	0	1
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Lus10024057 [exp]	1.0	0.9248
AT4G12010			Disease resistance protein (TI...		Lus10019654 [exp]	1.4	0.9227
AT4G17616			Pentatricopeptide repeat (PPR)...		Lus10037275 [exp]	2.4	0.8989
AT2G20410			RNA-binding ASCH domain protei...		Lus10014656 [exp]	3.0	0.8900
AT3G54980			Pentatricopeptide repeat (PPR)...		Lus10019524 [exp]	3.0	0.9202
AT1G55320		AAE18	acyl-activating enzyme 18 (.1....		Lus10012931 [exp]	3.2	0.8994
AT5G65540			unknown protein		Lus10025712 [exp]	3.5	0.9084
AT3G20650			mRNA capping enzyme family pro...		Lus10027333 [exp]	4.5	0.8777
AT2G46060			transmembrane protein-related ...		Lus10002472 [exp]	4.5	0.8897
AT5G64150			RNA methyltransferase family p...		Lus10015342 [exp]	4.9	0.8901

Compare expression of checked genes

Lus10038633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.