Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038634 pacid=23143160 polypeptide=Lus10038634 locus=Lus10038634.g ID=Lus10038634.BGIv1.0 annot-version=v1.0 ATGGCTCCCTTTCCATTTCTCTCAATAGCCATCATCTTCTTCTTCCCTTGTTGTCTCACTTATTGTTCATCCACCGCCATCCCGACTTCTCCAGCATTCC TCGGAAACTCACCGCCGCTGTCTTCTTACCAACAACTCTCCCCTGACATAGCTCCATTGTTGCCAACTCCAGGTGGCAAGCTGCCTTCTCCATCGGTCAC CTCCATCCCCACCATTCCTTCAAATCCAAGCTTTGAGTATCCTCAAGAGCTGGCTGCTGCACCTGCTTTCCCACCCATGGGAATGGGATCTGATCCTCCA TTAGCTTCCTCTGCATCCTATCACAGCTACTTGCCACTCTCTTTACTTTCCACTGCATTTCTCTCCATTCAATTACTTTCCTTGTTCATAAAGACAATTG TCCAGTGGATTCGACTGACATTGTCAGAGCCATAA
AA sequence Show only first row Show all	>Lus10038634 pacid=23143160 polypeptide=Lus10038634 locus=Lus10038634.g ID=Lus10038634.BGIv1.0 annot-version=v1.0 MAPFPFLSIAIIFFFPCCLTYCSSTAIPTSPAFLGNSPPLSSYQQLSPDIAPLLPTPGGKLPSPSVTSIPTIPSNPSFEYPQELAAAPAFPPMGMGSDPP LASSASYHSYLPLSLLSTAFLSIQLLSLFIKTIVQWIRLTLSEP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038634 [exp]	0	1
AT4G02320			Plant invertase/pectin methyle...		Lus10008203 [exp]	2.4	0.9487
AT4G12730		FLA2	FASCICLIN-like arabinogalactan...		Lus10001178 [exp]	2.6	0.9591
AT1G07420		SMO2-1, ATSMO1,...	Arabidopsis thaliana sterol 4-...		Lus10016492 [exp]	2.8	0.9468
AT5G15350		AtENODL17	early nodulin-like protein 17 ...		Lus10030690 [exp]	7.3	0.9229
AT3G44220			Late embryogenesis abundant (L...		Lus10043410 [exp]	9.2	0.9515
					Lus10025731 [exp]	9.2	0.9250
AT4G22010		SKS4	SKU5 similar 4 (.1)		Lus10015545 [exp]	9.5	0.9403
AT3G56130			biotin/lipoyl attachment domai...		Lus10009843 [exp]	10.1	0.9407
AT3G54770			RNA-binding (RRM/RBD/RNP motif...		Lus10041423 [exp]	11.2	0.9361
AT1G30690			Sec14p-like phosphatidylinosit...		Lus10038435 [exp]	11.8	0.9254

Compare expression of checked genes

Lus10038634 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.