Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39080 402 / 3e-141 EMB2799 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033974 [exp] 464 / 4e-166 AT2G39080 413 / 3e-145 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10012806 [exp] 451 / 7e-161 AT2G39080 415 / 8e-146 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1) Lus10037911 [exp] 233 / 2e-77 AT2G39080 187 / 5e-59 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G204700 [exp] 464 / 7e-166 AT2G39080 462 / 3e-164 EMBRYO DEFECTIVE 2799, NAD(P)-binding Rossmann-fold superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038637 pacid=23143007 polypeptide=Lus10038637 locus=Lus10038637.g ID=Lus10038637.BGIv1.0 annot-version=v1.0 ATGTCGTCGCCTCTTCAAGTCTCTGCATCGTCCACCATTGGTACCAAAGAGGATCAGGGGATGGCAACGCGATCATCTGGCCTTGTGGGAGAGACTGATC TGCTCATTGTTGGACCTGGAGTATTGGGTCGCTTAGTAGCCGAGAAATGGCGGGAGGAAAATCCAGGATGTCAAATTGTTGGAGAAACGGTGACCGAGGA CCATCATGAAGAATTGATCAAATTGGGGATACATCCTTGTCTTAGAGGGACTCATCAATCATCTCAACGATATCCTTATGTTATCTTTTGTGCTCCTCCC TATAGAACCGCGGATTATCCTGGCGATGTCAGGGAAGCTGCCCAGAGATGGAATGGAGAAAGCTGTTTCCTGTTTACTTCCAGCTCTGCACCTTATGATT GCAACGACAATGGTGAATGTGATGAGGACACTCCAGTTGTGCCAATTGGGAGAAGCCTCAGAACTGATGTCCTTCTAAATGCAGAAAATGTAGTTCTGGA AAGTGGAGGTTCCGTGGTTAGATTGGCTGGACTCTATATATCCTTTGATAGAGGTGCACATGTTTACTGGTTGGAGAAAGGGACATCTGACCTTCGCCCA GATCATATCCTTAACCTCATACACTACGAGGATGCTGCATCTCTCTGCATAACAATACTGAGAAACAAAATCCGTGGCCAGGTCTTCTTAGGTTGCGACA ACCATCCACTCTCTAGGCAGGAAATAATGGAGCTGGTTGCTAAAAGTGGCAAATTCAGCAAAACATTTGAGGGTTTTACAGGAACCAGTGATCCACTGGG CAAGAAACTAAGCAACTCAAGAACTCGGAAGGTGCTCTCATGGGAGCCTAACTACTCTAGCTTTGCTCATTTTCTTGGAGTTACGTTTGCCTCTGAATGA
AA sequence Show only first row Show all	>Lus10038637 pacid=23143007 polypeptide=Lus10038637 locus=Lus10038637.g ID=Lus10038637.BGIv1.0 annot-version=v1.0 MSSPLQVSASSTIGTKEDQGMATRSSGLVGETDLLIVGPGVLGRLVAEKWREENPGCQIVGETVTEDHHEELIKLGIHPCLRGTHQSSQRYPYVIFCAPP YRTADYPGDVREAAQRWNGESCFLFTSSSAPYDCNDNGECDEDTPVVPIGRSLRTDVLLNAENVVLESGGSVVRLAGLYISFDRGAHVYWLEKGTSDLRP DHILNLIHYEDAASLCITILRNKIRGQVFLGCDNHPLSRQEIMELVAKSGKFSKTFEGFTGTSDPLGKKLSNSRTRKVLSWEPNYSSFAHFLGVTFASE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39080		EMB2799	EMBRYO DEFECTIVE 2799, NAD(P)-...		Lus10038637 [exp]	0	1
AT1G35190			2-oxoglutarate (2OG) and Fe(II...		Lus10011126 [exp]	6.9	0.8938
AT5G27450		MVK, MK	mevalonate kinase (.1.2.3)		Lus10015168 [exp]	9.3	0.9081
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Lus10002292 [exp]	13.0	0.8396
AT5G54140		ILL3	IAA-leucine-resistant (ILR1)-l...		Lus10015388 [exp]	13.7	0.8903
AT2G39000			Acyl-CoA N-acyltransferases (N...		Lus10040401 [exp]	14.0	0.8816
AT2G42730			F-box family protein (.1.2)		Lus10028722 [exp]	14.4	0.8411
AT4G37880			LisH/CRA/RING-U-box domains-co...		Lus10020487 [exp]	18.0	0.8729
AT1G23260		MMZ1 ,UEV1A	UBIQUITIN E2 VARIANT 1A, MMS Z...		Lus10021797 [exp]	18.3	0.8125
AT5G20090			Uncharacterised protein family...		Lus10038250 [exp]	20.3	0.8909
AT1G03950		VPS2.3	vacuolar protein sorting-assoc...		Lus10033914 [exp]	20.9	0.8868

Compare expression of checked genes

Lus10038637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.