Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10550 1068 / 0 MTM1, AtMTM1 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1) AT5G04540 1045 / 0 Myotubularin-like phosphatases II superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037915 [exp] 1537 / 0 AT3G10550 1034 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233600 [exp] 1245 / 0 AT3G10550 1077 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1) Potri.008G026900 [exp] 1236 / 0 AT3G10550 1082 / 0.0 Arabidopsis thaliana myotubularin 1, Myotubularin-like phosphatases II superfamily (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF06602 [flax] [poplar] Myotub-related Myotubularin-like phosphatase domain
Representative CDS sequence Show only first row Show all	>Lus10038641 pacid=23143026 polypeptide=Lus10038641 locus=Lus10038641.g ID=Lus10038641.BGIv1.0 annot-version=v1.0 ATGGCGGCTTCCAGGACGCGACGATCAGCGTCGTACAGGGGGGACGCCTCCTCCGATTCCGAGAAGATGGAGTCCTCCGCCGGCTGGGACGACGCTCTCG ATTGGCTCAAGCTTGACGAGTCCAACCAGCCATCGGTGGTCTCCCGCTCTATTTCTTTCTCCCATCATCACCCCAATTACAAGTGTCTTCTTGAACGAGA ACGAGTCTTAGCTGAGGGACATGGTGTTGTTCTTGTTAATACAGATGAGGCAGGGACATTGGTAGTGACTAATTTTCGTCTTATGTTTCTGAGTGAGGGA ACTCAAAATATTGTTGCACTTGGCACAATACCGCTCACAGCGATTGAGAAGATGAACAAATTGGGTGTGAAGAATCAATCAGCTCCACGTCAATCTGAAA AGTCTGCATCAAGACGACTCCTCCAGGTTATTGGGAAAGATATGAGAATTGTTGTCTTTGGTTTTCGCCCAAGAACAAAGCAGAGGCGTGCCATATATAT TGCCTTGCAGAGAAGTTCAAAGCCTCTAAGAATCTGGGATCTTTTTGCATTTTCCTGTGGAACTTCAAACTTCGGCAACACAAATCCAAAAGTGAGGCTG CTAAATGAATATTTCCGCCTTCTTGGAAAAGGTTCTTATGGTGCCTCAATGAATATGATTGAGAAGGAGTCATATATGGTATCTAATGCGCTGTGGCGGA TCAGTAATGTGAATTCCAGCTATTCAATGTGCCAAACTTACCCATTTGCCTTGGTCCTGCCAAATTCCATCAGTGACGAGGAGGTGATCCAAGCATCCAC CTTTCGTGCTAGGGGTCGTTTGCCTGTAATTTCATGGTGTCATCCAGTCACTGGAGCTGTCCTTGCCCGTTCATCACAGCCTTTAGTTGGCCTTATGATG AATTTGAGGAGCAATGCCGATGAGAAGCTTGTTGCTGCTCTAAGCACTCAGTCTGGTGGAGCTCGAGGGAGGAGGAAGTTATACATTGCTGATGCACGTC CAAGAAAAAATGCTTTAGCCAATGGGGCAATGGGTGGTGGCTCAGAGTCGTCATCTAATTATTTTCAGTCTGAGGTAGTATTTTTGGGGATTGACAACAT ACATGCAATGAGGGAGAGCCTTTCTCGATTGCGAGACTACCTGGATACTCATGGCACTACATCATCAGATGGCATGTCTTCTTTTCTGAGACATGGTGGT TGGACGTGGGGCGGTGGCAATCTTAGCAGCATGTCTGCTTCTGTATCAGCCTTTGGGGACAGTGGTTGGCTGACACATGTCCAGAGTGTCTTGACTGGTG CAGCCTGGATTGCTGGACATGTCGCTTTAGAATCAGCATCTGTTCTTGTACATTGCAGTGATGGATGGGATAGAACTACCCAGCTGGTTGCACTTGCTAA TTTATTGCTTGATCCATACTATAGAACATTTGCTGGGTTTCAGGCACTTGTTGAGAAGGATTGGCTTGCATTTGGTCATCCGTTCGCAGATCGTATGGGA ATTCCAACTGTATCTGGAAGCAGCAAGATGCCTTTTGAATTAACACGACAAGCTTCTGTTGGGAGTTTTCCACCATCACCTGGCCATCAATCGGTTGGAT CAACTGCAGCTCCTAGTGCTTCTCATGCACAGAACAATTGTTCTCCAATATTTTCACAGTGGGTCGACTGTGTGTCGCAGTTGCTGCGGATATATCCTTT CGCTTTTGAGTTCTCCTCGGCTTTCCTTGTCGATTTATTGGACTGCATGATGTCATGCCGTTTCGGGAACTTCTTCTGTAATAGTGAAAGGGAAAGGCAG CAAATTGGTGTCGCTGAAGCTTGTGGGTGCATGTGGGCTTATTTGGCCGATGTACGTTCGTCAAAAGGAAGGTCTCATAGTCACTTCAACTTATTTTATG ATCCACTGAAACACGATGGTCCCTTATTACCCCCAGCAGCAGCTTTGGCTCCTACCTTATGGCCTCAGTTCCATCTTCGATGGGCTTGCCCATCTGAAGC ACAAGTTGGTGAGCTTGAAGATCAATGCAGAGAAATGTCTCTTAGATTTAATGACCTACAGAAGGCAAAAGATGTAGCAGAGAAGAAAGCTGCAGAAATG ACTAGTGCCTTTGAATCATTGTCGGTGGAATTACGGCATGAGAAGCAGCTGAGTAGCTCAGCAATGGCTTTGGCCAAAAGATCGAGCAAGGAAAGTGCTG TAATTAAGCGTGCCATACAGTCCTTGGGATGCAATGTTCATTTTGCTAGTGGCAGCGACATCGAGAGTAGCCCTTTGAATGCACAACATAGGTTAACAAG TTCTCATACGCAACGAGATTCAGATGGCACTACTGTGCACCAGAATGACCCGTCAGATGTTTCAGTTTCAATATCAGTCGTGGCCGATGAAAATGTTTCT GCAAGCAATCCCATTACTCAAATGTGTGAAAGTGTGTGCCCATTACGTACTCGAGAGGGAGGATGCAAGTGGCCAGATGCTGGTTGTGCTCAGCTAGGCA GTCAGTTCCTTGGACTGAAGGCAAACTATGATGCCTTTGATAGGCTTTCTATATACGATAGTTATTTCCAAACAGATTGA
AA sequence Show only first row Show all	>Lus10038641 pacid=23143026 polypeptide=Lus10038641 locus=Lus10038641.g ID=Lus10038641.BGIv1.0 annot-version=v1.0 MAASRTRRSASYRGDASSDSEKMESSAGWDDALDWLKLDESNQPSVVSRSISFSHHHPNYKCLLERERVLAEGHGVVLVNTDEAGTLVVTNFRLMFLSEG TQNIVALGTIPLTAIEKMNKLGVKNQSAPRQSEKSASRRLLQVIGKDMRIVVFGFRPRTKQRRAIYIALQRSSKPLRIWDLFAFSCGTSNFGNTNPKVRL LNEYFRLLGKGSYGASMNMIEKESYMVSNALWRISNVNSSYSMCQTYPFALVLPNSISDEEVIQASTFRARGRLPVISWCHPVTGAVLARSSQPLVGLMM NLRSNADEKLVAALSTQSGGARGRRKLYIADARPRKNALANGAMGGGSESSSNYFQSEVVFLGIDNIHAMRESLSRLRDYLDTHGTTSSDGMSSFLRHGG WTWGGGNLSSMSASVSAFGDSGWLTHVQSVLTGAAWIAGHVALESASVLVHCSDGWDRTTQLVALANLLLDPYYRTFAGFQALVEKDWLAFGHPFADRMG IPTVSGSSKMPFELTRQASVGSFPPSPGHQSVGSTAAPSASHAQNNCSPIFSQWVDCVSQLLRIYPFAFEFSSAFLVDLLDCMMSCRFGNFFCNSERERQ QIGVAEACGCMWAYLADVRSSKGRSHSHFNLFYDPLKHDGPLLPPAAALAPTLWPQFHLRWACPSEAQVGELEDQCREMSLRFNDLQKAKDVAEKKAAEM TSAFESLSVELRHEKQLSSSAMALAKRSSKESAVIKRAIQSLGCNVHFASGSDIESSPLNAQHRLTSSHTQRDSDGTTVHQNDPSDVSVSISVVADENVS ASNPITQMCESVCPLRTREGGCKWPDAGCAQLGSQFLGLKANYDAFDRLSIYDSYFQTD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10038641 [exp]	0	1
AT1G80910			Protein of unknown function (D...		Lus10034582 [exp]	8.2	0.8785
AT1G47240		ATNRAMP2, NRAMP...	NRAMP metal ion transporter 2 ...		Lus10010395 [exp]	8.7	0.8376
AT2G34660		EST4, ATMRP2, A...	Arabidopsis thaliana ATP-bindi...		Lus10023275 [exp]	9.5	0.8451
AT3G48860			unknown protein		Lus10016721 [exp]	9.6	0.8680
AT4G00630		ATKEA2, KEA2	K+ efflux antiporter 2, K+ eff...		Lus10040938 [exp]	11.0	0.8295
AT4G08480		MEKK2, MAPKKK9	MAPK/ERK KINASE KINASE 2, mito...		Lus10029657 [exp]	12.0	0.8842
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	14.2	0.8578
AT4G08500		ARAKIN, ATMEKK1...	MAPK/ERK kinase kinase 1 (.1)		Lus10003745 [exp]	16.9	0.8197
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	17.3	0.8391
AT1G23230			unknown protein		Lus10035997 [exp]	17.5	0.8478

Compare expression of checked genes

Lus10038641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.