Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027118 [exp] 188 / 2e-62 ND / Lus10017801 [exp] 118 / 3e-34 ND / Lus10038483 [exp] 112 / 3e-33 ND / Lus10007416 [exp] 100 / 5e-26 ND / Lus10026444 [exp] 93 / 7e-23 ND / Lus10029488 [exp] 92 / 1e-22 ND / Lus10039353 [exp] 83 / 3e-19 ND / Lus10006886 [exp] 81 / 8e-19 ND / Lus10042979 [exp] 81 / 2e-18 AT5G08020 54 / 5e-07 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038642 pacid=23143053 polypeptide=Lus10038642 locus=Lus10038642.g ID=Lus10038642.BGIv1.0 annot-version=v1.0 ATGTTCTTGCGTGATATTGTGGTGGCCGACCCTCCGGCCGAACTTCAGCTCCGCCTCCAACACATTTGGCGGCTCTGCAACCCGCCGGAGCCGGAACAAC ATTGTGCCTTGGGTACTCTTTGGACAGACGATGATGAACACCGCATCGAAGAATACACCGAGCCTGATGATGTCGAGGAGGTCACTAGGCTCATTGCCGA AGGCTCTATTTACAAAATCCACAATCCCTATCTTATACGAGCTCGCTCCGCAATGCGCTCGTGTCCAGGAGATTTCTCAATTTCCATTCGCTCTGAAAAC CTGCTCCACAAAGTTGAGGAAGACCCTGAACGACCGTTTTTCCCCGCATTTGCCTTCAGCATAGTTACCACTAAAATGCTGCGTGCCGCACCTCCCGGTC AAACTGCTTCGTCAGGTCGTCCCTAA
AA sequence Show only first row Show all	>Lus10038642 pacid=23143053 polypeptide=Lus10038642 locus=Lus10038642.g ID=Lus10038642.BGIv1.0 annot-version=v1.0 MFLRDIVVADPPAELQLRLQHIWRLCNPPEPEQHCALGTLWTDDDEHRIEEYTEPDDVEEVTRLIAEGSIYKIHNPYLIRARSAMRSCPGDFSISIRSEN LLHKVEEDPERPFFPAFAFSIVTTKMLRAAPPGQTASSGRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10038642 [exp]	0	1
					Lus10043100 [exp]	1.7	0.9848
AT5G66740			Protein of unknown function (D...		Lus10026031 [exp]	2.6	0.9613
AT2G44450		BGLU15	beta glucosidase 15 (.1)		Lus10026057 [exp]	3.5	0.9773
					Lus10032696 [exp]	4.5	0.9707
AT1G65480		FT	FLOWERING LOCUS T, PEBP (phosp...		Lus10004452 [exp]	5.7	0.9585
AT5G41850			alpha/beta-Hydrolases superfam...		Lus10023100 [exp]	7.7	0.9533
AT4G18060			SH3 domain-containing protein ...		Lus10025372 [exp]	9.8	0.8498
AT5G60440	MADS	AGL62	AGAMOUS-like 62 (.1)		Lus10003481 [exp]	10.1	0.9788
AT5G01370		ACI1	ALC-interacting protein 1 (.1)		Lus10001252 [exp]	13.0	0.8754
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Lus10003004 [exp]	16.9	0.9642

Compare expression of checked genes

Lus10038642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.