Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52230 76 / 4e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037916 [exp] 192 / 1e-62 AT3G52230 78 / 5e-18 unknown protein Lus10028838 [exp] 117 / 3e-34 AT3G52230 77 / 3e-18 unknown protein Lus10017445 [exp] 62 / 2e-13 ND 34 / 0.009
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233400 [exp] 109 / 3e-31 AT3G52230 74 / 1e-17 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038643 pacid=23143120 polypeptide=Lus10038643 locus=Lus10038643.g ID=Lus10038643.BGIv1.0 annot-version=v1.0 ATGGCGGCGAAGAGTGGAAAGATGGCGGTGCCTGGGAAAGACGAAGAAGGACCTAGAGAGACCAAGTCGGGGCCGTTGTCTTTTCTTCCAAAGTTCAATT TACCGAACCCTTTCTTCAACCGAGCAGCAGAGACTGCTTTGCTTTCTCCTGTTGGTGAAAGGGAGAAGGAAATTGAAGCTCCAAAACCTAATGTTGTGAG GTTTCCCAACGCTCGCCCGGTAGTTCCTCCTCCTATGGAAATTAAGGTTGAAGAGAGTTCTCATAAAACTCACAATCCCATTATTATTTGGCAGGTATAT GCAATCGGAGGGTTTATAATACTGAAGTGGGTATGGGCAAGATGGAATGAAAGGAAGGAGAGAGCGAAAAAGGGATCATCATCAGAGGAGAATCGATCTC CAGAGTACGAGTCACCTGGTGAAGGCGGCGAGGATTAG
AA sequence Show only first row Show all	>Lus10038643 pacid=23143120 polypeptide=Lus10038643 locus=Lus10038643.g ID=Lus10038643.BGIv1.0 annot-version=v1.0 MAAKSGKMAVPGKDEEGPRETKSGPLSFLPKFNLPNPFFNRAAETALLSPVGEREKEIEAPKPNVVRFPNARPVVPPPMEIKVEESSHKTHNPIIIWQVY AIGGFIILKWVWARWNERKERAKKGSSSEENRSPEYESPGEGGED

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52230			unknown protein		Lus10038643 [exp]	0	1
AT3G52230			unknown protein		Lus10037916 [exp]	1.7	0.8757
AT3G15790		MBD11, ATMBD11	methyl-CPG-binding domain 11 (...		Lus10043263 [exp]	2.8	0.8846
AT4G38495			unknown protein		Lus10029400 [exp]	3.2	0.8546
AT1G15340		MBD10	methyl-CPG-binding domain 10 (...		Lus10019406 [exp]	5.1	0.8979
					Lus10024538 [exp]	5.5	0.8613
AT3G14630		CYP72A9	"cytochrome P450, family 72, s...		Lus10019188 [exp]	6.3	0.8637
AT1G63460		ATGPX8	glutathione peroxidase 8 (.1)		Lus10000601 [exp]	7.0	0.8579
AT2G04520			Nucleic acid-binding, OB-fold-...		Lus10000920 [exp]	9.4	0.8716
AT1G49950	MYB	ATTRB1, TRB1	telomere repeat binding factor...		Lus10025203 [exp]	12.4	0.8397
					Lus10012945 [exp]	13.7	0.8561

Compare expression of checked genes

Lus10038643 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.