Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52210 477 / 3e-169 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) AT3G20650 92 / 2e-20 mRNA capping enzyme family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037917 [exp] 747 / 0 AT3G52210 474 / 2e-165 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10003803 [exp] 92 / 5e-20 AT3G20650 581 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10010478 [exp] 89 / 8e-19 AT3G20650 570 / 0.0 mRNA capping enzyme family protein (.1.2) Lus10027333 [exp] 70 / 1e-12 AT3G20650 482 / 4e-169 mRNA capping enzyme family protein (.1.2) Lus10039035 [exp] 67 / 7e-12 AT3G20650 485 / 2e-172 mRNA capping enzyme family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G233100 [exp] 541 / 0 AT3G52210 489 / 2e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.011G130100 [exp] 88 / 4e-19 AT3G20650 582 / 0.0 mRNA capping enzyme family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [flax] [poplar] NADP_Rossmann PF03291 [flax] [poplar] Pox_MCEL mRNA capping enzyme
Representative CDS sequence Show only first row Show all	>Lus10038644 pacid=23143032 polypeptide=Lus10038644 locus=Lus10038644.g ID=Lus10038644.BGIv1.0 annot-version=v1.0 ATGCTACCCTTCTCAGTTGGTCGGCCGGAGTCGATTCACTACCGCCTTCATGAGTTCGCCAAGTTGGCCCTCGTTAACATCTTCGCCCACCCTTATGCCA CCGTTTTCGATTTGTACTGCGGTGCTGGACTTGACGCCGAGATATGGGCCGGCACTCAAATCGGCCACTACATTGGCATAGACGTGCCGGATTCTGGATT GAGTGAAATCAAAGAAGCTTTGGAGAGCCATAGGAAAGCCTACACTGCTGAATTCTTCGAGGCCGATCCTTGCTCGGAAGATTTTGAGGCTCAGTTGAAA GAGAAGGCTGGTCAGGTGGATTTGGTCTGCTGCTTACAGAATTTGCAGCTCTGTTTTGAAACTGAGGAGAGTGCAAGGAAACTGCTGCACAATGTGTCAT CTTTGCTTAAACCAGGGGGTTATTTTTTTGGTATTACTCCTGACTCATCTACCATATGGGCGAAGTACCAGAAGAATGTGGAGGCATACCACAATAGAAG TGCTAGCATGAAGCCAAATATTGTTCCTAATTGCATTCGGTCCGAGAGTTATATGATCACTTTTGAGGTTGAAGAGGAAAAGTTCCCTCTATTTGGAAAG AAGTACCAGCTAAAATTTGCTCATGACAGTGTGGCTGAAACCTTTTGTTTGGTTCATTTTCCGAGCTTGATCAGGTTGGCTCGAGAAGCTGGTCTAGAGT ATGTGGAAATTCAGAATCTGACAGAATTTTATGATGACAACAAAATGCATTTCGCAGGAATGCTGTCGAATGCTGGTGCAACTCTTGTGGATCCAAGAGG AAGACTCCTTCCCAGATCATATGATGTTCTAGGTCTTTATTCAACCTTCATATTTCAGAAGCCTGATCTAGACGCTGGCCCACCTCTTACCAGTCCAATA CTGGAAGAAGACAACTGCAGTCACAAAGAGGCAATTGGAAATGTGGTGGGTTTGCAGCAGGTGTTGATTGAGAGAGATTGGGAAGCAACTGCGACCATAT GGAAAGATGATGAGAAGGCTACTTCAATACAAGTGCCAGCTTTAGTAATGGTATCAACGCCAGCACCAACGGAGGCCCCTCTTGGACTTGGGAAGATCAG TGAGCAGAAAGGGATATTGGGTCCAGGTCCTGCCGATTTACGCTTCTCAGAGGCTATGTGA
AA sequence Show only first row Show all	>Lus10038644 pacid=23143032 polypeptide=Lus10038644 locus=Lus10038644.g ID=Lus10038644.BGIv1.0 annot-version=v1.0 MLPFSVGRPESIHYRLHEFAKLALVNIFAHPYATVFDLYCGAGLDAEIWAGTQIGHYIGIDVPDSGLSEIKEALESHRKAYTAEFFEADPCSEDFEAQLK EKAGQVDLVCCLQNLQLCFETEESARKLLHNVSSLLKPGGYFFGITPDSSTIWAKYQKNVEAYHNRSASMKPNIVPNCIRSESYMITFEVEEEKFPLFGK KYQLKFAHDSVAETFCLVHFPSLIRLAREAGLEYVEIQNLTEFYDDNKMHFAGMLSNAGATLVDPRGRLLPRSYDVLGLYSTFIFQKPDLDAGPPLTSPI LEEDNCSHKEAIGNVVGLQQVLIERDWEATATIWKDDEKATSIQVPALVMVSTPAPTEAPLGLGKISEQKGILGPGPADLRFSEAM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10038644 [exp]	0	1
AT5G35360		CAC2	acetyl Co-enzyme a carboxylase...		Lus10042901 [exp]	1.0	0.9008
AT1G09230			RNA-binding (RRM/RBD/RNP motif...		Lus10016372 [exp]	1.4	0.8854
AT2G01130			DEA(D/H)-box RNA helicase fami...		Lus10007938 [exp]	2.4	0.8697
AT2G03510			SPFH/Band 7/PHB domain-contain...		Lus10037073 [exp]	2.4	0.8615
AT3G27930			unknown protein		Lus10008782 [exp]	3.2	0.8622
AT4G00020		BRCA2(IV), BRCA...	MATERNAL EFFECT EMBRYO ARREST ...		Lus10017785 [exp]	3.7	0.8593
AT2G04940			scramblase-related (.1)		Lus10004532 [exp]	6.7	0.8484
AT3G52210			S-adenosyl-L-methionine-depend...		Lus10037917 [exp]	7.7	0.8382
AT3G63530		BB2, BB	BIG BROTHER, RING/U-box superf...		Lus10016416 [exp]	8.7	0.8630
AT2G45730			eukaryotic initiation factor 3...		Lus10034521 [exp]	10.6	0.8021

Compare expression of checked genes

Lus10038644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.