Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01610 202 / 8e-66 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G14890 196 / 2e-63 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G23205 156 / 6e-48 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G70720 154 / 5e-47 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62760 128 / 1e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62350 122 / 8e-35 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT4G25260 119 / 2e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT5G62360 117 / 8e-33 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT3G47380 113 / 4e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) AT1G62770 113 / 6e-31 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031138 [exp] 121 / 3e-34 AT5G62360 172 / 3e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038914 [exp] 119 / 2e-33 AT5G62350 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027198 [exp] 118 / 3e-33 AT5G62350 191 / 3e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031711 [exp] 117 / 9e-33 AT5G62360 145 / 4e-44 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10038915 [exp] 117 / 2e-32 AT5G62360 174 / 5e-55 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10031133 [exp] 114 / 2e-31 AT5G62350 211 / 8e-70 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10028910 [exp] 114 / 4e-31 AT1G62760 169 / 1e-51 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10004327 [exp] 112 / 2e-30 AT1G62760 164 / 8e-50 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Lus10027199 [exp] 110 / 8e-30 AT5G62360 169 / 3e-53 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G132600 [exp] 236 / 2e-79 AT1G14890 216 / 1e-71 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.010G109300 [exp] 230 / 8e-77 AT1G14890 218 / 5e-72 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128300 [exp] 131 / 3e-38 AT5G62360 192 / 1e-62 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128100 [exp] 125 / 8e-36 AT5G62360 221 / 1e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128700 [exp] 124 / 3e-35 AT5G62350 221 / 7e-74 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.015G128200 [exp] 121 / 2e-34 AT5G62360 172 / 1e-54 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.012G127500 [exp] 121 / 3e-34 AT5G62350 220 / 2e-73 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113700 [exp] 118 / 4e-33 AT4G12390 178 / 1e-56 pectin methylesterase inhibitor 1 (.1) Potri.012G127400 [exp] 117 / 1e-32 AT4G25250 150 / 7e-46 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1) Potri.003G113600 [exp] 115 / 7e-32 AT1G62760 171 / 1e-52 Plant invertase/pectin methylesterase inhibitor superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04043 [flax] [poplar] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Lus10038645 pacid=23143162 polypeptide=Lus10038645 locus=Lus10038645.g ID=Lus10038645.BGIv1.0 annot-version=v1.0 ATGACAACAACCACCACTTTCCTTCAACCTCCGCTTCTCCTCCTTCTTTTCCTCCTCCTTCTCCTAAACCCTCTTTCCTCGGCCGCCGCATCCGACGACG ACAACAACAACAATAATAACCAATCCGCTAACTCCACCGCCGACTATATCCGCTCCAGCTGCAACGCCACGCTGTACCCGGACGTCTGCTACACTTCCCT CTCCCGCTATGCCAGCGCCGTCCAGCAGAGCCCCTCCCGTCTCGCCGTCGTGGCCGTCGGCGTCAGCCTTTCCAGGGCCAGCCGCACCGCCAGGTTTGTC GCCGACGCCTCGTCCCAGGCCGACTACGGCTCCGACCGCCGCACTGCCTCCGCCCTCCACGACTGCCTCTCCAGCTTCGGCGACGCCATCGACGAGATCC GAAGCTCCCTGAAGCAGATGCGAGAGCTAGGGGAATCGGCCGGATCTTCTTCTTCTTCGGCGGAGGAGTTCCGGTTCCAGATGAGCAACGTGCAGACATG GATCAGCGCGGCGCTTACGGACGAGGAGACGTGTACGGACGGGTTCGAGGAGATCGGTGAGGGGGGAGTGAAGGAGGCGATTTGCAAGCGTGCGGAGGTG GCCAAGAAGTTCACGAGTAATGCGCTTGCCTTGGTTAACAGTTACGCTGCCGCCGGAATCCCCTAG
AA sequence Show only first row Show all	>Lus10038645 pacid=23143162 polypeptide=Lus10038645 locus=Lus10038645.g ID=Lus10038645.BGIv1.0 annot-version=v1.0 MTTTTTFLQPPLLLLLFLLLLLNPLSSAAASDDDNNNNNNQSANSTADYIRSSCNATLYPDVCYTSLSRYASAVQQSPSRLAVVAVGVSLSRASRTARFV ADASSQADYGSDRRTASALHDCLSSFGDAIDEIRSSLKQMRELGESAGSSSSSAEEFRFQMSNVQTWISAALTDEETCTDGFEEIGEGGVKEAICKRAEV AKKFTSNALALVNSYAAAGIP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G01610			Plant invertase/pectin methyle...		Lus10038645 [exp]	0	1
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10024808 [exp]	2.0	0.9456
					Lus10040587 [exp]	3.0	0.9447
AT3G49750		AtRLP44	receptor like protein 44 (.1)		Lus10011561 [exp]	3.6	0.9456
AT2G36570			Leucine-rich repeat protein ki...		Lus10021131 [exp]	6.6	0.8942
AT3G45230			hydroxyproline-rich glycoprote...		Lus10041306 [exp]	7.3	0.9350
AT5G25190	AP2_ERF	ESE3	ethylene and salt inducible 3,...		Lus10041023 [exp]	8.1	0.8839
AT5G60640		ATPDI2, ATPDIL1...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10041307 [exp]	9.2	0.9209
AT1G46480	HD	WOX4	WUSCHEL related homeobox 4 (.1...		Lus10018726 [exp]	10.2	0.9213
					Lus10016903 [exp]	10.2	0.9284
AT2G04480			unknown protein		Lus10032584 [exp]	11.0	0.9253

Compare expression of checked genes

Lus10038645 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.