Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10540 807 / 0 3-phosphoinositide-dependent protein kinase (.1) AT5G04510 799 / 0 ATPDK1, PDK1 3'-phosphoinositide-dependent protein kinase 1 (.1.2) AT3G08720 218 / 5e-65 ATPK2, ATPK19, ATS6K2, S6K2 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) AT3G08730 213 / 2e-63 ATS6K1, ATPK6, ATPK1 P70 RIBOSOMAL S6 KINASE, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 6, ARABIDOPSIS THALIANA PROTEIN-SERINE KINASE 1, protein-serine kinase 1 (.1) AT5G58140 196 / 2e-54 NPL1, PHOT2 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) AT1G30640 192 / 2e-54 Protein kinase family protein (.1) AT1G45160 193 / 3e-53 Protein kinase superfamily protein (.1.2) AT1G48490 193 / 7e-53 Protein kinase superfamily protein (.1.2.3) AT5G62310 187 / 6e-51 IRE INCOMPLETE ROOT HAIR ELONGATION, AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) AT2G34650 179 / 1e-50 ABR, PID PINOID, ABRUPTUS, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028834 [exp] 887 / 0 AT3G10540 817 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10017448 [exp] 882 / 0 AT3G10540 821 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10037921 [exp] 783 / 0 AT3G10540 694 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Lus10025213 [exp] 206 / 3e-58 AT3G08720 570 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10033125 [exp] 198 / 1e-56 AT3G08720 515 / 1e-179 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Lus10021176 [exp] 190 / 5e-54 AT4G14350 861 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10011814 [exp] 190 / 5e-54 AT4G14350 888 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein Lus10026572 [exp] 195 / 7e-54 AT5G58140 1290 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Lus10001604 [exp] 193 / 3e-53 AT5G58140 1218 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G028800 [exp] 804 / 0 AT3G10540 809 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.010G232800 [exp] 801 / 0 AT3G10540 834 / 0.0 3-phosphoinositide-dependent protein kinase (.1) Potri.006G109600 [exp] 203 / 2e-59 AT3G08720 637 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.012G073700 [exp] 200 / 2e-58 AT3G08720 483 / 1e-168 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.016G138400 [exp] 198 / 1e-57 AT3G08720 639 / 0.0 ARABIDOPSIS THALIANA SERINE/THREONINE PROTEIN KINASE 2, ARABIDOPSIS THALIANA PROTEIN KINASE 2, Arabidopsis thaliana protein kinase 19, serine/threonine protein kinase 2 (.1.2) Potri.001G342000 [exp] 198 / 9e-55 AT3G45780 1388 / 0.0 ROOT PHOTOTROPISM 1, NONPHOTOTROPIC HYPOCOTYL 1, phototropin 1 (.1.2) Potri.002G263000 [exp] 198 / 1e-54 AT1G45160 1162 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G209700 [exp] 194 / 2e-53 AT5G58140 1332 / 0.0 NON PHOTOTROPIC HYPOCOTYL 1-LIKE, phototropin 2 (.1.2.3.4) Potri.005G226700 [exp] 188 / 4e-53 AT2G20470 826 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein (.1) Potri.011G157000 [exp] 182 / 7e-51 AT4G14350 800 / 0.0 AGC (cAMP-dependent, cGMP-dependent and protein kinase C) kinase family protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10038647 pacid=23143143 polypeptide=Lus10038647 locus=Lus10038647.g ID=Lus10038647.BGIv1.0 annot-version=v1.0 ATGTTGGCAATGGAGAAGGATTTTGATTCAAAGCTAAGAATGCAGGGCGGTGACAACTCTTCTGTTACTGCAACCTTCTGTTCTTCCTCTACCGCTACTT CGGTTGCTGCTACTGGCAACGGGAATCCACCAAAATGTAACAGTTTCGCGTTTAGGGCACCCCAGGAAAATTTCTCCATTCAGGATTTTGAGCTTGGCAA GATCTATGGCGTTGGTTCTTACTCAAAGGTGGTGAGAGCTAAAAAGAAGGATAGTGGAATTGTGTATGCGTTGAAGATCATGGACAAAAAATTCATCACA AAGGAAAATAAAACAGCTTATGTGAAGTTGGAAAGAATCGTGCTTGATCAATTGGATCATCCAGGAGTTGTTCGCCTGTATTTTACTTTCCAAGATACAT TTTCCTTGTATATGGCACTCGAGTCTTGCGAAGGTGGTGAGCTTTTCGACCAAATAACTAGGAAACGCCGTTTGTCAGAGGAGGAAGCTAGATTTTATGC TGCTGAAGTTGTAGATGCCCTTGAGTACATACATAAGATGGGGTTGATTCACCGAGATATCAAGCCGGAGAACTTGCTTCTTACAGGAGATGGACATATA AAAATTGCCGATTTTGGAAGTGTGAAGCCAATGCAGGATAGCCGTATTACTGTGCTGCCGAATGCAGCTTCTGAGGATAAAGCTTGCACATTTGTCGGTA CGGCTGCATATGTACCTCCAGAAGTCCTTAACTCCTCTCCTGCAACTTTTGGAAATGACCTATGGGCACTTGGATGCACAGTGTACCAGATGCTTTCAGG GACATCTCCATTCAAAGATGCAAGTGAATGGCTTATATTTCAAAAGATTATAGCCAGGGATGTATGCTTTCCTGATTATTTTTCGAAAGAAGCCAAAGAC CTCATAGATAGGTTGCTGGACACTGAACCTGGACGAAGACCGGGTGCTGGTCCTGATGGTTATGGAGCACTGAAGTTGCATCCTTTCTTTAAAGGGGTTG ATTGGAACAATTTAAGATCACAAACCCCTCCGGAACTTGCTGCTGACCCTACGGCACAGTCAGGTGATGGAGTTGAGCCTGATTCATGGAATCCTACGCA TGTTGGTGACTGTTCTGGACCAAATGATGGGAACGTTCCTGCTCTATCATCTACTGAAGGATCTATAACACGTCTTGCCTCGATTGACTCGTTTGATTCT AGATGGCAACAGTTTTTGGATCATGGGGAATCCGTAATCATGATCTCCATGGTGAAGAAGTTACAGAAGTTGACTAGCAAGAAGGTGCAGCTTATCCTCA CCAACAAACCGAAGCTGATTTACGTTGACCCCTCGAAACTAGTGGTAAAGGGCAATATCATCTGGTCTGACAATTCAGACGACCTCAGTGTCCAAGTAAC CAGCTCTTCGAATTTCAAGATCTGTACGCCAAAGAAGGTAATGTCGTTTGAAGACTCGAAACAAAGAGCGTTGCAGTGGAAAAAGGCAATCGAGACACTG CAAAACCGGTGA
AA sequence Show only first row Show all	>Lus10038647 pacid=23143143 polypeptide=Lus10038647 locus=Lus10038647.g ID=Lus10038647.BGIv1.0 annot-version=v1.0 MLAMEKDFDSKLRMQGGDNSSVTATFCSSSTATSVAATGNGNPPKCNSFAFRAPQENFSIQDFELGKIYGVGSYSKVVRAKKKDSGIVYALKIMDKKFIT KENKTAYVKLERIVLDQLDHPGVVRLYFTFQDTFSLYMALESCEGGELFDQITRKRRLSEEEARFYAAEVVDALEYIHKMGLIHRDIKPENLLLTGDGHI KIADFGSVKPMQDSRITVLPNAASEDKACTFVGTAAYVPPEVLNSSPATFGNDLWALGCTVYQMLSGTSPFKDASEWLIFQKIIARDVCFPDYFSKEAKD LIDRLLDTEPGRRPGAGPDGYGALKLHPFFKGVDWNNLRSQTPPELAADPTAQSGDGVEPDSWNPTHVGDCSGPNDGNVPALSSTEGSITRLASIDSFDS RWQQFLDHGESVIMISMVKKLQKLTSKKVQLILTNKPKLIYVDPSKLVVKGNIIWSDNSDDLSVQVTSSSNFKICTPKKVMSFEDSKQRALQWKKAIETL QNR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10540			3-phosphoinositide-dependent p...		Lus10038647 [exp]	0	1
AT1G43850		SEU	SEUSS transcriptional co-regul...		Lus10028635 [exp]	1.4	0.8716
AT5G03415	E2F_DP	ATDPB, DPB	Transcription factor DP (.1.2)		Lus10022620 [exp]	1.7	0.8438
AT1G79030			Chaperone DnaJ-domain superfam...		Lus10032666 [exp]	2.0	0.8420
AT2G23770			protein kinase family protein ...		Lus10016299 [exp]	6.0	0.8246
					Lus10019266 [exp]	7.7	0.7782
AT4G20430			Subtilase family protein (.1.2...		Lus10008060 [exp]	11.7	0.8477
AT5G56590			O-Glycosyl hydrolases family 1...		Lus10012937 [exp]	22.6	0.8282
AT3G19960		ATM1, ATATM	myosin 1 (.1.2)		Lus10013443 [exp]	23.8	0.8336
AT3G12210			DNA binding (.1.2)		Lus10018653 [exp]	24.5	0.8324
AT3G05470			Actin-binding FH2 (formin homo...		Lus10031496 [exp]	26.8	0.8304

Compare expression of checked genes

Lus10038647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.