Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G68570 57 / 4e-10 Major facilitator superfamily protein (.1) AT3G47960 51 / 3e-08 Major facilitator superfamily protein (.1) AT5G19640 51 / 3e-08 Major facilitator superfamily protein (.1) AT1G32450 50 / 6e-08 NRT1.5 nitrate transporter 1.5 (.1) AT1G59740 50 / 8e-08 Major facilitator superfamily protein (.1) AT5G62680 46 / 2e-06 Major facilitator superfamily protein (.1) AT1G27040 45 / 3e-06 Major facilitator superfamily protein (.1.2) AT3G54140 45 / 6e-06 ATPTR1 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) AT1G69860 44 / 6e-06 Major facilitator superfamily protein (.1) AT2G02040 43 / 2e-05 NTR1, ATPTR2-B NITRATE TRANSPORTER 1, ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 2, peptide transporter 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041466 [exp] 55 / 2e-09 AT1G68570 850 / 0.0 Major facilitator superfamily protein (.1) Lus10037221 [exp] 54 / 4e-09 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10036705 [exp] 53 / 6e-09 AT1G69870 709 / 0.0 nitrate transporter 1.7 (.1) Lus10015351 [exp] 53 / 8e-09 AT1G18880 682 / 0.0 nitrate transporter 1.9, Major facilitator superfamily protein (.1) Lus10034305 [exp] 52 / 2e-08 AT1G68570 681 / 0.0 Major facilitator superfamily protein (.1) Lus10039782 [exp] 50 / 6e-08 AT2G26690 851 / 0.0 Major facilitator superfamily protein (.1) Lus10017817 [exp] 49 / 2e-07 AT1G68570 637 / 0.0 Major facilitator superfamily protein (.1) Lus10012663 [exp] 49 / 3e-07 AT2G37900 696 / 0.0 Major facilitator superfamily protein (.1) Lus10018838 [exp] 49 / 3e-07 AT1G68570 571 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G076800 [exp] 62 / 4e-12 AT3G47960 680 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071400 [exp] 57 / 4e-10 AT5G62680 689 / 0.0 Major facilitator superfamily protein (.1) Potri.010G126300 [exp] 54 / 3e-09 AT1G68570 901 / 0.0 Major facilitator superfamily protein (.1) Potri.001G351200 [exp] 54 / 4e-09 AT5G62680 677 / 0.0 Major facilitator superfamily protein (.1) Potri.012G071500 [exp] 54 / 4e-09 AT5G62680 779 / 0.0 Major facilitator superfamily protein (.1) Potri.001G248600 [exp] 51 / 4e-08 AT3G54140 834 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.009G042400 [exp] 49 / 1e-07 AT3G54140 832 / 0.0 ARABIDOPSIS THALIANA PEPTIDE TRANSPORTER 1, peptide transporter 1 (.1) Potri.006G033900 [exp] 49 / 2e-07 AT1G68570 607 / 0.0 Major facilitator superfamily protein (.1) Potri.006G034000 [exp] 48 / 3e-07 AT1G68570 656 / 0.0 Major facilitator superfamily protein (.1) Potri.014G157500 [exp] 45 / 4e-06 AT3G21670 772 / 0.0 Major facilitator superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038648 pacid=23143057 polypeptide=Lus10038648 locus=Lus10038648.g ID=Lus10038648.BGIv1.0 annot-version=v1.0 ATGGGGATCGGCCTATGCATTTCGACCATCACTACTTTGGTGGCTGCAATCGTCGAGCTGAAGGTAAATGGGCATCACGAGGGGTACTCAAGTCTTTTAT CTGGTGCCACAGACAGTACCCATTGGTTAGGCGGAGGCTTTCAATTCTGTGGCCCAAATACCCAACTTCGGGAGAACTTGACGAGTCTGACCGGAGCTCT ATTCCCCAAGGGCTATGCCTTTGGAAACTTCGACAGTGCTATAGTTCTCCTCATCGTTAGCCAAGCCACCAAACTATCTAACGGCGAAAGTAACTGGCTG CCCGACAACGCCCAACTAAACGGATCAAAGTTGTGTTGTTTTTATTTTCTACTGCCACTGGCACTTGGTGTGGTTAATATGTGTTTCTTTTTACCTATGG CTAGGTGGTAA
AA sequence Show only first row Show all	>Lus10038648 pacid=23143057 polypeptide=Lus10038648 locus=Lus10038648.g ID=Lus10038648.BGIv1.0 annot-version=v1.0 MGIGLCISTITTLVAAIVELKVNGHHEGYSSLLSGATDSTHWLGGGFQFCGPNTQLRENLTSLTGALFPKGYAFGNFDSAIVLLIVSQATKLSNGESNWL PDNAQLNGSKLCCFYFLLPLALGVVNMCFFLPMARW

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G68570			Major facilitator superfamily ...		Lus10038648 [exp]	0	1
AT1G18720			Protein of unknown function (D...		Lus10001647 [exp]	5.5	1.0000
AT5G12460			Protein of unknown function (D...		Lus10003179 [exp]	5.5	1.0000
					Lus10003763 [exp]	6.7	1.0000
					Lus10006079 [exp]	10.0	1.0000
					Lus10010414 [exp]	11.8	1.0000
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10032280 [exp]	12.6	0.9825
					Lus10010663 [exp]	12.7	1.0000
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10010628 [exp]	13.0	1.0000
AT4G28780			GDSL-like Lipase/Acylhydrolase...		Lus10023578 [exp]	14.1	1.0000
AT1G15780			unknown protein		Lus10023978 [exp]	15.0	1.0000

Compare expression of checked genes

Lus10038648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.