Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15960 412 / 2e-144 alpha/beta-Hydrolases superfamily protein (.1) AT4G02340 386 / 6e-135 alpha/beta-Hydrolases superfamily protein (.1) AT3G05600 375 / 1e-130 alpha/beta-Hydrolases superfamily protein (.1) AT2G26740 362 / 2e-125 ATSEH soluble epoxide hydrolase (.1) AT2G26750 348 / 4e-120 alpha/beta-Hydrolases superfamily protein (.1) AT4G15955 343 / 2e-118 alpha/beta-Hydrolases superfamily protein (.1.2.3) AT3G51000 266 / 1e-87 alpha/beta-Hydrolases superfamily protein (.1) AT4G12830 56 / 2e-08 alpha/beta-Hydrolases superfamily protein (.1) AT4G33180 49 / 2e-06 alpha/beta-Hydrolases superfamily protein (.1) AT1G52510 41 / 0.001 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010293 [exp] 406 / 1e-142 AT4G02340 476 / 1e-170 alpha/beta-Hydrolases superfamily protein (.1) Lus10029878 [exp] 382 / 4e-133 AT3G05600 425 / 3e-150 alpha/beta-Hydrolases superfamily protein (.1) Lus10020663 [exp] 379 / 5e-132 AT3G05600 416 / 1e-146 alpha/beta-Hydrolases superfamily protein (.1) Lus10004439 [exp] 348 / 5e-120 AT4G02340 384 / 3e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10026141 [exp] 342 / 1e-117 AT4G02340 446 / 6e-159 alpha/beta-Hydrolases superfamily protein (.1) Lus10008683 [exp] 339 / 2e-116 AT4G02340 428 / 1e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10037577 [exp] 322 / 2e-109 AT4G02340 384 / 6e-134 alpha/beta-Hydrolases superfamily protein (.1) Lus10006827 [exp] 308 / 4e-104 AT4G02340 380 / 8e-133 alpha/beta-Hydrolases superfamily protein (.1) Lus10037559 [exp] 308 / 6e-104 AT4G02340 367 / 2e-127 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G010900 [exp] 469 / 1e-167 AT4G15960 412 / 3e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010800 [exp] 469 / 1e-167 AT4G15960 413 / 1e-144 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G010700 [exp] 440 / 5e-156 AT4G15960 404 / 2e-141 alpha/beta-Hydrolases superfamily protein (.1) Potri.013G013500 [exp] 395 / 2e-138 AT3G05600 425 / 2e-150 alpha/beta-Hydrolases superfamily protein (.1) Potri.002G202700 [exp] 393 / 9e-138 AT4G02340 513 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.014G127200 [exp] 390 / 1e-136 AT4G02340 519 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G081000 [exp] 340 / 4e-116 AT4G02340 455 / 1e-161 alpha/beta-Hydrolases superfamily protein (.1) Potri.007G018900 [exp] 300 / 6e-101 AT3G51000 454 / 9e-162 alpha/beta-Hydrolases superfamily protein (.1) Potri.005G023400 [exp] 201 / 8e-64 AT3G05600 238 / 8e-79 alpha/beta-Hydrolases superfamily protein (.1) Potri.011G048000 [exp] 189 / 6e-58 AT3G51000 219 / 2e-69 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10038649 pacid=23143119 polypeptide=Lus10038649 locus=Lus10038649.g ID=Lus10038649.BGIv1.0 annot-version=v1.0 ATGGACGGGATAACCCACAGGACTCTGAACCTCAACGGCATCAACCTCCACGTGGCGGAGTCCGGCCCCAAAGACGGCCCCGTCATCCTCTTCCTCCACG GCTTCCCTCAACTCTGGTACTGCTGGCGCCACCAGATGCTCGCCATGGCTTCCCTCGGTTACCGCGCGGTGGCACCTGACTTGAGAGGCTTCGGAGATAC CGACGCCCCTTCCGATCCCGAAAGCTACACCGCGTTCCACGTCGTCGGCGACCTGGTGGCGCTGATCGACGCGGTGGCGCCTGCTGCTGCTGCTGCAGCA GGGGAAGTAGGTTGTGAGGCGGGGAAAGTTTTCGTGGTGGCGCACGATTGGGGAGCATACATGGCTTGGAATCTGTGCTTGTTCAGACCTGATAAGGTTA AGGCTATGGTCACTTTGAGCGTCCCGTTTAGCCCCAGGAATCCTAATCGGAAACCAATCCCGTCTCTCAAGGCCTTCTTAGGCGATGATTACTACATTTG CAGGATTCAGGAGGCTGGAGTTATGGAAGCTGAATTTGCAGAGCTGGGAACAGAGAGAGTTGTAAAGGAATTCTTAACTTACCACACCCCAGCTCCTCTT TACTTGCATAAGGGAAACCTATTCGGGCATCCAGCTAACACACCCATCCCACTCCCGCCATGGCTGTCTGAACAAGATGTCAAGTACTATACAGACAAGT ACGAGAAAACAGGATTCACTGGAGGATTCAACTACTATCGCAACATCGATCGGAACTGGGAATTGTCAGCAGCGTGGACGGGAGTGCAGATAAAAGTGCC GGTGAAGTTCATAGTTGGGGATCAGGACCTTACCTATAACACAGGAAACGCCAGGGAGTATATAAGCAAAGGAGGGATGAAGAAGGACGTTCCTTTCCTG CAGGAAGTAGTTGTGATGGAAGGAGTTGGGCATTTCATCAACGAAGAAAGGCCTCAAGACATTACCAACCACATTGCTGACTTCTTTTCCAAGTTCTAA
AA sequence Show only first row Show all	>Lus10038649 pacid=23143119 polypeptide=Lus10038649 locus=Lus10038649.g ID=Lus10038649.BGIv1.0 annot-version=v1.0 MDGITHRTLNLNGINLHVAESGPKDGPVILFLHGFPQLWYCWRHQMLAMASLGYRAVAPDLRGFGDTDAPSDPESYTAFHVVGDLVALIDAVAPAAAAAA GEVGCEAGKVFVVAHDWGAYMAWNLCLFRPDKVKAMVTLSVPFSPRNPNRKPIPSLKAFLGDDYYICRIQEAGVMEAEFAELGTERVVKEFLTYHTPAPL YLHKGNLFGHPANTPIPLPPWLSEQDVKYYTDKYEKTGFTGGFNYYRNIDRNWELSAAWTGVQIKVPVKFIVGDQDLTYNTGNAREYISKGGMKKDVPFL QEVVVMEGVGHFINEERPQDITNHIADFFSKF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15960			alpha/beta-Hydrolases superfam...		Lus10038649 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10011404 [exp]	1.4	0.9203
AT1G13130			Cellulase (glycosyl hydrolase ...		Lus10006462 [exp]	2.4	0.8910
AT3G15510	NAC	ATNAC2, ANAC056...	NAC-REGULATED SEED MORPHOLOGY ...		Lus10032657 [exp]	3.5	0.8649
AT5G20870			O-Glycosyl hydrolases family 1...		Lus10001183 [exp]	3.5	0.8812
AT1G11570		NTL	NTF2-like (.1.2)		Lus10020061 [exp]	7.7	0.8890
AT5G56150		UBC30	ubiquitin-conjugating enzyme 3...		Lus10016670 [exp]	7.7	0.8723
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Lus10004724 [exp]	11.5	0.8470
AT1G10350			DNAJ heat shock family protein...		Lus10013280 [exp]	11.8	0.8627
AT3G05200		ATL6	RING/U-box superfamily protein...		Lus10031515 [exp]	13.4	0.8465
AT2G42610		LSH10	LIGHT SENSITIVE HYPOCOTYLS 10,...		Lus10007272 [exp]	13.9	0.8593

Compare expression of checked genes

Lus10038649 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.