Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G14890 405 / 1e-135 phosphoesterase (.1.2) AT2G31320 47 / 2e-05 ATPARP2 poly(ADP-ribose) polymerase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037922 [exp] 691 / 0 AT3G14890 413 / 3e-139 phosphoesterase (.1.2) Lus10033871 [exp] 50 / 4e-06 AT2G31320 1372 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G390500 [exp] 472 / 1e-166 AT3G14890 407 / 3e-138 phosphoesterase (.1.2) Potri.002G041300 [exp] 44 / 0.0002 AT2G31320 1382 / 0.0 poly(ADP-ribose) polymerase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [flax] [poplar] Zn_Beta_Ribbon PF00645 [flax] [poplar] zf-PARP Poly(ADP-ribose) polymerase and DNA-Ligase Zn-finger region CL0137 [flax] [poplar] HAD PF08645 [flax] [poplar] PNK3P Polynucleotide kinase 3 phosphatase
Representative CDS sequence Show only first row Show all	>Lus10038650 pacid=23143072 polypeptide=Lus10038650 locus=Lus10038650.g ID=Lus10038650.BGIv1.0 annot-version=v1.0 ATGCTGGTCACCGCCGTCTCAACGCATTTCCGTAGTATGCGCAGCATTCCCTTCCGCATGTTCGCCATTTCCTTCTCCAAACCCACTACTCCATTCCCCT CCATTTTCGTATCCCATTCATTGACTTCTTCCATTACCATCACTCCCACTACTTCACTTCGTTACTTCACTCACTTTTCCGCCTCCCTCCGCCTCCGCCG CCATCCTATGGCTCCTTCTTCCAAACCTAAAATCGTAGCCGAATACGCCAAATCCGGCCGATCGTCCTGCAAGAATTGCTCCCAATCCATTCCTTCCAAA TCCCTCCGGCTAGGGCTCGTCTCCCGCGACTCCCGAGGGTTTGACATGACTAAATGGCACCATATGCGTTGCTTCCCCGAACCCTTCGATTCCGTTGACC TGATTTCCGGCTTCGATTCTCTCCAGGTCAATCCATCTTTCGGAATCTGTCCCATTGTCTCTCCTTACTGTTTCGGTCGTCTCATTTTCCCCATCTTCTT CTATGTGTTGCAGAGTTGTGATAAGGAGGATTTGAAGAAACTAGTGGATGCATGCAAGTGTTCCAATGGAGACACTGAGATTGAGAAACGAAGCAGAAAG AACTCTGAAGCTGATATTGATGGAGTCCACGATGGATCTGAGAATAAGATCTCTAAGAAAGTTAAGCTGACGGTCAACGTAGAAACCAAGATCGAGATAG TGTTTTCCACCTCTGATGTGAAGGACACATACAAGGGTGCTACTCTACTTCCCAAGTGGAAGGCCTTCCAGACAGTCATTTTTCTTCAGACGGAGGATGG ACTTCGTGACTCAGATAAGATTGCTGCATTTGATTTTGATGGATGTCTTGCAAAAACATCTGTGAAGAGAATAGGTGCAGAGGCGTGGTCCCTAATGTAC CCTTCTATTCCAGACAAGCTCAAGAGCTTGTACAATGATGGTTACAAACTGGTTATCTTTACAAATGAATCTAACATAGATCGCTGGAAGAACAAGAGAC AAGTAGCCGTGGACTCCAAAATTGGGCGCCTGAACAATTTCATTGAGCATGTGAAGCTTCCAATTCAGGTTTTTATAGCATGTGGCTTTGCTGCTAGCGG AGTGGAGGATTTGTACCGCAAACCCAACCCTGGAATGTGGCGTCTCATGGAGAATCATCTCAACTCTGGGATTCCAATTGATATGGAACAGTTATCCTTC TATGTTGGTGATGCAGCAGGGAGAAACGACGACCATAGCGACGCTGATATAAAATTTGCACAGGCAGTGGGACTAAAGTTTCATGTTCCTGAGGACTTCT TCGGTGCATGA
AA sequence Show only first row Show all	>Lus10038650 pacid=23143072 polypeptide=Lus10038650 locus=Lus10038650.g ID=Lus10038650.BGIv1.0 annot-version=v1.0 MLVTAVSTHFRSMRSIPFRMFAISFSKPTTPFPSIFVSHSLTSSITITPTTSLRYFTHFSASLRLRRHPMAPSSKPKIVAEYAKSGRSSCKNCSQSIPSK SLRLGLVSRDSRGFDMTKWHHMRCFPEPFDSVDLISGFDSLQVNPSFGICPIVSPYCFGRLIFPIFFYVLQSCDKEDLKKLVDACKCSNGDTEIEKRSRK NSEADIDGVHDGSENKISKKVKLTVNVETKIEIVFSTSDVKDTYKGATLLPKWKAFQTVIFLQTEDGLRDSDKIAAFDFDGCLAKTSVKRIGAEAWSLMY PSIPDKLKSLYNDGYKLVIFTNESNIDRWKNKRQVAVDSKIGRLNNFIEHVKLPIQVFIACGFAASGVEDLYRKPNPGMWRLMENHLNSGIPIDMEQLSF YVGDAAGRNDDHSDADIKFAQAVGLKFHVPEDFFGA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G14890			phosphoesterase (.1.2)		Lus10038650 [exp]	0	1
AT2G37290			Ypt/Rab-GAP domain of gyp1p su...		Lus10014020 [exp]	4.5	0.7651
AT5G50340			ATP-dependent peptidases;nucle...		Lus10025843 [exp]	5.9	0.7800
AT4G11410			NAD(P)-binding Rossmann-fold s...		Lus10028781 [exp]	7.3	0.7359
AT3G15460			Ribosomal RNA processing Brix ...		Lus10014058 [exp]	19.4	0.6977
AT5G50310			Galactose oxidase/kelch repeat...		Lus10040895 [exp]	23.6	0.7263
AT4G32050			neurochondrin family protein (...		Lus10032403 [exp]	28.8	0.7252
AT1G33420			RING/FYVE/PHD zinc finger supe...		Lus10039160 [exp]	29.1	0.6969
AT5G35390			Leucine-rich repeat protein ki...		Lus10027597 [exp]	29.7	0.6918
AT1G27070			5'-AMP-activated protein kinas...		Lus10030802 [exp]	35.7	0.6595
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Lus10041020 [exp]	36.9	0.6972

Compare expression of checked genes

Lus10038650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.