Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52190 473 / 6e-167 AtPHF1, PHF1 phosphate transporter traffic facilitator1 (.1) AT2G01470 125 / 4e-32 ATSEC12, STL2P SEC12P-like 2 protein (.1) AT5G50650 122 / 2e-31 Transducin/WD40 repeat-like superfamily protein (.1) AT5G50550 122 / 2e-31 Transducin/WD40 repeat-like superfamily protein (.1) AT1G73720 48 / 8e-06 SMU1 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) AT2G37160 46 / 3e-05 Transducin/WD40 repeat-like superfamily protein (.1.2) AT4G02730 45 / 4e-05 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 44 / 0.0001 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT3G53390 43 / 0.0003 Transducin/WD40 repeat-like superfamily protein (.1) AT2G16405 43 / 0.0004 Transducin/WD40 repeat-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037923 [exp] 734 / 0 AT3G52190 497 / 2e-176 phosphate transporter traffic facilitator1 (.1) Lus10017451 [exp] 630 / 0 AT3G52190 516 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10028830 [exp] 612 / 0 AT3G52190 518 / 0.0 phosphate transporter traffic facilitator1 (.1) Lus10035728 [exp] 146 / 1e-39 AT2G01470 332 / 3e-111 SEC12P-like 2 protein (.1) Lus10037313 [exp] 140 / 2e-37 AT2G01470 328 / 2e-109 SEC12P-like 2 protein (.1) Lus10038425 [exp] 53 / 2e-07 AT1G73720 956 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10023381 [exp] 53 / 2e-07 AT1G73720 953 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Lus10011863 [exp] 45 / 7e-05 AT2G32700 909 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7) Lus10022797 [exp] 45 / 7e-05 AT2G32700 903 / 0.0 MUCILAGE-MODIFIED 1, LEUNIG_homolog (.1.2.3.4.5.6.7)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029200 [exp] 580 / 0 AT3G52190 489 / 2e-173 phosphate transporter traffic facilitator1 (.1) Potri.010G232400 [exp] 580 / 0 AT3G52190 511 / 0.0 phosphate transporter traffic facilitator1 (.1) Potri.008G130300 [exp] 152 / 5e-42 AT2G01470 355 / 2e-120 SEC12P-like 2 protein (.1) Potri.010G111800 [exp] 140 / 2e-37 AT2G01470 346 / 7e-117 SEC12P-like 2 protein (.1) Potri.011G156900 [exp] 50 / 2e-06 AT1G73720 948 / 0.0 SUPPRESSORS OF MEC-8 AND UNC-52 1, transducin family protein / WD-40 repeat family protein (.1) Potri.007G009500 [exp] 45 / 7e-05 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.002G051900 [exp] 43 / 0.0002 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 42 / 0.0003 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.006G129100 [exp] 42 / 0.0005 AT2G37160 811 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.016G088800 [exp] 42 / 0.0007 AT3G53390 813 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF00400 [flax] [poplar] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Lus10038651 pacid=23143094 polypeptide=Lus10038651 locus=Lus10038651.g ID=Lus10038651.BGIv1.0 annot-version=v1.0 ATGGAGTCGAGGCAGGGAACCGTGGTTTTCGGGTCGTGGATCCGGAGACCAGAGAACGTGAATCTCGTCGTTTTGGGCAAGTCCAGAGCTGCTAGTGGTC GCCATTCTTCTTCTCCTTCTTCTTCCACATCGTCATTGCTCGAGATCTTCACCTTCGATCACGCCACCACTTCACTCTCTGCCTCTCCCTTGGCTACTTA CGAGCTTGAAGAGACGGATGGTGATTTGGTTTCGATTGCCGTTCATCCCAGCGGTGATGATTTCGTCTGCTCTACAACCAACGGTGGCTGCATATCATTT GAGTTGGGAGGTGAAGAAACAAACTTTAAGCTGCGGGCTAAGGAATTGTCGGCTCTTCGAAGTGTTGGTCCGCAGAAATGCCTGGCTTTCAGCGTTGATG GCTCTAAACTTGCATCTGGTGGTGTGGATGGGCATCTCAGAATTTTAAACTGGCAGACTCTAAGCAGCGTTCTTGATGAACCAAGTGCTCACAAATCATT CCAGGATATGGATTTCAGCCTTGATTCAGAGTTCTTAGCTTCAACATCTATTGATGGTTCTGCAAGAATATGGAAGACAGAGGACGGTTCACCAGTAATT AACCTGGCTCGAAACGCAGACGAGAGAATCGAATTATGCAGATTCTCGAAAGATGGAACAAAGCCCTTTCTGTTTTGTGCTGTTCAAAAGGGTGATAAGG GTGTCACTTCAGTTTATGATATAAGCACGTGGAAAAAAATTGGGTTCAAGAGGCTTCTTAGAAAGCCTGCTTCTATGATGTCTGTGAGCCTAGATGGGAA ATATCTCGCCCTGGGAAGTAAGGATGGTGACATATGTGTAGCTGAAGTGAGGAAGATGGAAGTTAGCCACTGGAGCAGGAGGCTGCACCTTGGTACCTGC CTTACATCTCTGGACTTTTGCCCTACTCAGAGGGTCGTGCTTACGACATCCAATCAATGGGGTGCCGTAGTGACAAAGCTAACAGTTCCAGCAGATTGGA AAGAGTGGCAAATCTACGTGTTGCTTGTGGGACTGTTCTTAGCATCTGCAGTGGCGTTCTACATCTTCTTCCAGAAATCTGATTCATTCCGGAACTTCCC AATGGACAGAAATCAACCACCGGGAAGAGCAAGGTTCCAGCCCATATTAAGGGAGACACCAGAAGACCCATTTGGGCCTTTGGACTTGTGA
AA sequence Show only first row Show all	>Lus10038651 pacid=23143094 polypeptide=Lus10038651 locus=Lus10038651.g ID=Lus10038651.BGIv1.0 annot-version=v1.0 MESRQGTVVFGSWIRRPENVNLVVLGKSRAASGRHSSSPSSSTSSLLEIFTFDHATTSLSASPLATYELEETDGDLVSIAVHPSGDDFVCSTTNGGCISF ELGGEETNFKLRAKELSALRSVGPQKCLAFSVDGSKLASGGVDGHLRILNWQTLSSVLDEPSAHKSFQDMDFSLDSEFLASTSIDGSARIWKTEDGSPVI NLARNADERIELCRFSKDGTKPFLFCAVQKGDKGVTSVYDISTWKKIGFKRLLRKPASMMSVSLDGKYLALGSKDGDICVAEVRKMEVSHWSRRLHLGTC LTSLDFCPTQRVVLTTSNQWGAVVTKLTVPADWKEWQIYVLLVGLFLASAVAFYIFFQKSDSFRNFPMDRNQPPGRARFQPILRETPEDPFGPLDL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Lus10038651 [exp]	0	1
AT5G49555			FAD/NAD(P)-binding oxidoreduct...		Lus10024010 [exp]	1.7	0.9181
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10024306 [exp]	3.0	0.9219
AT4G01630		ATEXP17, ATHEXP...	EXPANSIN 17, expansin A17 (.1)		Lus10009253 [exp]	10.5	0.9084
AT3G13790		ATCWINV1, ATBFR...	ARABIDOPSIS THALIANA CELL WALL...		Lus10008392 [exp]	12.0	0.9212
					Lus10041183 [exp]	16.1	0.8429
AT1G23550		SRO2	similar to RCD one 2 (.1)		Lus10030878 [exp]	18.3	0.8824
AT3G19080			SWIB complex BAF60b domain-con...		Lus10009333 [exp]	18.7	0.9179
AT1G11320			unknown protein		Lus10013574 [exp]	20.0	0.9113
AT1G70350			unknown protein		Lus10029157 [exp]	21.2	0.8690
AT4G31420	C2H2ZnF		Zinc finger protein 622 (.1.2)		Lus10020150 [exp]	23.6	0.9008

Compare expression of checked genes

Lus10038651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.