Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52180 434 / 2e-152 ATSEX4, SEX4, ATPTPKIS1, DSP4 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) AT3G10940 150 / 1e-42 LSF2 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) AT3G01510 106 / 5e-25 LSF1 like SEX4 1 (.1) AT3G06110 41 / 0.0004 DSPTP1B, MKP2, ATMKP2 DUAL-SPECIFICITY PROTEIN PHOSPHATASE 1B, ARABIDOPSIS MAPK PHOSPHATASE 2, MAPK phosphatase 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037924 [exp] 638 / 0 AT3G52180 464 / 2e-163 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Lus10034214 [exp] 135 / 3e-37 AT3G10940 405 / 5e-144 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10029052 [exp] 135 / 8e-37 AT3G10940 394 / 2e-139 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Lus10008779 [exp] 105 / 1e-24 AT3G01510 703 / 0.0 like SEX4 1 (.1) Lus10022236 [exp] 100 / 4e-23 AT3G01510 567 / 0.0 like SEX4 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G029300 [exp] 497 / 3e-177 AT3G52180 461 / 1e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.010G232200 [exp] 491 / 1e-174 AT3G52180 459 / 5e-162 STARCH-EXCESS 4, DUAL-SPECIFICITY PROTEIN PHOSPHATASE 4, dual specificity protein phosphatase (DsPTP1) family protein (.1), dual specificity protein phosphatase (DsPTP1) family protein (.2) Potri.019G048600 [exp] 138 / 5e-38 AT3G10940 417 / 2e-148 LIKE SEX4 2, dual specificity protein phosphatase (DsPTP1) family protein (.1) Potri.001G349000 [exp] 113 / 3e-27 AT3G01510 775 / 0.0 like SEX4 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0031 [flax] [poplar] Phosphatase PF00782 [flax] [poplar] DSPc Dual specificity phosphatase, catalytic domain
Representative CDS sequence Show only first row Show all	>Lus10038652 pacid=23143028 polypeptide=Lus10038652 locus=Lus10038652.g ID=Lus10038652.BGIv1.0 annot-version=v1.0 ATGAGCTCAAATCCTCCGTCTCTCCACCTCCCGCTATTTGGCGGGCACCGCAGATCCTCGGCTCTGCCCCGGCGAACCTTCGATTGCCCACCGAGGAAGC CTTCTACGGCTTCCTCCGCAAATCTGGCAATATCCGGGTCAACATCCAGTGCCGAGAGTGGCGAGGATGTAAAGGCTGAAGAAAAATCTGATGTATACAG TAACAACATGACAGAAGCTATGGGTGCAGTTTTGACGTACAGGCATGAGCTAGGAATGAATTACAACTTCATCCGTCCAGACTTGATTTGTGGATCATGC CTGCAGACACCTGAAGATGTTGACAAGCTTCGTAAAATTGGAGTGAAAACCGTATTTTGCTTGCAAAAGGATTCCGACTTGGAATACTTTTTGGTAGATA TTGGTGCCATTAGAAAGTATGCTAACTCGTATGATGATATTCAGCATTTGCGTGCTGAAATAAGGGATTTTGATGCATTCGACTTGAGGATACGGCTTCC TGCTGTAGTTAGCAAATTATACAAGGCTATAAACCGGAATGGTGGTGTGGCATACATTCACTGCACAGCTGGATTGGGAAGAGCTCCTGCTACGGTGATG GCATATATGTTTTGGGTTCAAGGCTACAAACTTAAGGAAGCTCATGATCTGCTTCTGAGCAAACGCTCTTGCTTCCCGAAGATGGAGGCTATCAAAAGTG CAACCGCTGACATACTTGCAGGATTCAGAAAGAAGCTTGTGACATTATCATGGAAAGATAGCAATTGCTCTACTGTGGAAATTTCTGGACTTGATATTGG TTGGGGTCAGAGAATTCCTCTGAGACTGGACGCTGAACAAGGCTTGTGGATTCTTGAGAGGGAACTTTTGGAAGGAAGGTACGAATACAAGTACATTGTT GATGGTGAATGGACAAGCAACAAAAATGAGCTACTTACTTCTCGGAATAAAGACGGCCATGTCAACAACTACGTCGAGGTGATCGATGAAGGAGATAATG ATAGAGCCGAACTAAGGAAGAGGGTAACAAGTGATGATCCGTACCTCACGAGAGCTGAGCGGTTGAAGATAAGAGAGTTTCTTGAAGCGCAACCCGACGA TGAAGAAGAGAACTGA
AA sequence Show only first row Show all	>Lus10038652 pacid=23143028 polypeptide=Lus10038652 locus=Lus10038652.g ID=Lus10038652.BGIv1.0 annot-version=v1.0 MSSNPPSLHLPLFGGHRRSSALPRRTFDCPPRKPSTASSANLAISGSTSSAESGEDVKAEEKSDVYSNNMTEAMGAVLTYRHELGMNYNFIRPDLICGSC LQTPEDVDKLRKIGVKTVFCLQKDSDLEYFLVDIGAIRKYANSYDDIQHLRAEIRDFDAFDLRIRLPAVVSKLYKAINRNGGVAYIHCTAGLGRAPATVM AYMFWVQGYKLKEAHDLLLSKRSCFPKMEAIKSATADILAGFRKKLVTLSWKDSNCSTVEISGLDIGWGQRIPLRLDAEQGLWILERELLEGRYEYKYIV DGEWTSNKNELLTSRNKDGHVNNYVEVIDEGDNDRAELRKRVTSDDPYLTRAERLKIREFLEAQPDDEEEN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10038652 [exp]	0	1
AT4G04330		AtRbcX1	homologue of cyanobacterial Rb...		Lus10011972 [exp]	3.7	0.9027
AT3G52180		ATSEX4, SEX4, A...	STARCH-EXCESS 4, DUAL-SPECIFIC...		Lus10037924 [exp]	4.2	0.8870
AT4G17090		CT-BMY, BMY8, B...	BETA-AMYLASE 8, BETA-AMYLASE 3...		Lus10011035 [exp]	11.0	0.8514
AT5G23240			DNAJ heat shock N-terminal dom...		Lus10040990 [exp]	13.2	0.8509
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10038253 [exp]	13.4	0.8803
AT4G18690			unknown protein		Lus10015276 [exp]	13.4	0.7725
AT2G31040			ATP synthase protein I -relate...		Lus10029836 [exp]	15.0	0.8431
AT3G28050			nodulin MtN21 /EamA-like trans...		Lus10039433 [exp]	17.9	0.8225
AT2G17800		ARAC1, ATGP2, A...	RHO-RELATED GTPASES FROM PLANT...		Lus10025959 [exp]	18.2	0.8315
AT3G15840		PIFI	post-illumination chlorophyll ...		Lus10025847 [exp]	18.3	0.8613

Compare expression of checked genes

Lus10038652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.