Plant FIBer expression Database

Lus10038655 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10520 169 / 5e-55 ATGLB2, ARATHGLB2, NSHB2, AHB2 NON-SYMBIOTIC HAEMOGLOBIN 2, ARABIDOPSIS HEMOGLOBIN 2, haemoglobin 2 (.1)
AT2G16060 122 / 1e-36 ATGLB1, ARATHGLB1, NSHB1, AHB1 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10037926
[exp]
224 / 1e-76 AT3G10520 230 / 1e-78 NON-SYMBIOTIC HAEMOGLOBIN 2, ARABIDOPSIS HEMOGLOBIN 2, haemoglobin 2 (.1)
Lus10005467
[exp]
116 / 3e-34 AT2G16060 237 / 1e-81 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G110800
[exp]
122 / 1e-36 AT2G16060 253 / 1e-87 CLASS I HEMOGLOBIN, hemoglobin 1 (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0090 Globin PF00042 Globin Globin
Representative CDS sequence
>Lus10038655 pacid=23143019 polypeptide=Lus10038655 locus=Lus10038655.g ID=Lus10038655.BGIv1.0 annot-version=v1.0
ATGTTCTCCTTCCTCCGAGATTCAGATGAGATCCCTCTCAACAATCCTAAGCTCAAAGCCCATGCTGTTAAGGTCTTCAACATGACATGCGAGTCGGCAA
TACAACTAAGGGAGAAGGGACAAGTGGTAGTGAAGGATACAACACTCCAATATTTGGGTTCGGTCCATGTCAAGGCTGGGGTTGTGGGGCCTCACTTTGA
GGTAGTGAAGGAAGCACTGGTCAGGACATTGAAAGGAGGAGTTGGAGAAGAGAAATGGAGCTCCGATATGGAGGAAGCTTGGGTCTATGCTTACGACCAA
CTTGCTGCTGCCATCAAAGCTCACATGATCCTCTCACTCACCACCGCCGCCGCTTCCGCTTCTTGA
AA sequence
>Lus10038655 pacid=23143019 polypeptide=Lus10038655 locus=Lus10038655.g ID=Lus10038655.BGIv1.0 annot-version=v1.0
MFSFLRDSDEIPLNNPKLKAHAVKVFNMTCESAIQLREKGQVVVKDTTLQYLGSVHVKAGVVGPHFEVVKEALVRTLKGGVGEEKWSSDMEEAWVYAYDQ
LAAAIKAHMILSLTTAAASAS

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10520 ATGLB2, ARATHGL... NON-SYMBIOTIC HAEMOGLOBIN 2, A... Lus10038655
[exp]
0 1
AT4G18590 Nucleic acid-binding, OB-fold-... Lus10022705
[exp]
1.0 0.9843
Lus10001343
[exp]
1.4 0.9744
AT3G26330 CYP71B37 "cytochrome P450, family 71, s... Lus10033564
[exp]
1.7 0.9445
AT2G44060 Late embryogenesis abundant pr... Lus10019367
[exp]
2.4 0.9353
AT4G26690 GDPDL3, GPDL2, ... SHAVEN 3, MUTANT ROOT HAIR 5, ... Lus10043171
[exp]
3.2 0.8660
AT5G08640 ATFLS1, FLS flavonol synthase 1 (.1.2) Lus10023601
[exp]
4.0 0.9426
AT3G19000 2-oxoglutarate (2OG) and Fe(II... Lus10024230
[exp]
4.6 0.9102
AT1G50660 unknown protein Lus10002072
[exp]
5.0 0.9413
AT3G23730 XTH16 xyloglucan endotransglucosylas... Lus10031393
[exp]
5.1 0.8209
AT4G21520 Transducin/WD40 repeat-like su... Lus10002602
[exp]
5.3 0.8173

Lus10038655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.