Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04460 809 / 0 RING/U-box superfamily protein (.1.2.3) AT2G27950 241 / 8e-68 Ring/U-Box superfamily protein (.1) AT1G30860 99 / 3e-21 RING/U-box superfamily protein (.1) AT2G34920 98 / 6e-21 EDA18 embryo sac development arrest 18, RING/U-box superfamily protein (.1) AT4G20160 59 / 2e-08 unknown protein AT2G38195 55 / 9e-08 RING/U-box superfamily protein (.1.2) AT1G59560 55 / 1e-07 ZCF61, DAL2 DIAP1-like protein 2, E3 Ubiquitin ligase family protein (.1) AT2G38220 55 / 2e-07 RING/U-box superfamily protein (.1) AT5G19080 53 / 4e-07 RING/U-box superfamily protein (.1) AT3G06140 53 / 4e-07 RING/U-box superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037928 [exp] 1466 / 0 AT5G04460 912 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10017455 [exp] 1040 / 0 AT5G04460 858 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10028827 [exp] 1031 / 0 AT5G04460 879 / 0.0 RING/U-box superfamily protein (.1.2.3) Lus10021403 [exp] 467 / 1e-152 AT2G27950 470 / 5e-154 Ring/U-Box superfamily protein (.1) Lus10016162 [exp] 250 / 6e-74 AT2G27950 278 / 6e-85 Ring/U-Box superfamily protein (.1) Lus10036249 [exp] 63 / 9e-10 AT4G20160 182 / 3e-48 unknown protein Lus10038389 [exp] 61 / 2e-09 AT4G20160 155 / 2e-40 unknown protein Lus10004419 [exp] 57 / 4e-08 AT3G06140 350 / 4e-119 RING/U-box superfamily protein (.1) Lus10034030 [exp] 55 / 1e-07 AT5G19080 344 / 1e-116 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030100 [exp] 1077 / 0 AT5G04460 805 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.010G231100 [exp] 1068 / 0 AT5G04460 768 / 0.0 RING/U-box superfamily protein (.1.2.3) Potri.004G217700 [exp] 313 / 1e-93 AT2G27950 533 / 2e-177 Ring/U-Box superfamily protein (.1) Potri.009G003500 [exp] 305 / 2e-90 AT2G27950 578 / 0.0 Ring/U-Box superfamily protein (.1) Potri.003G156400 [exp] 126 / 1e-29 AT2G34920 172 / 5e-45 embryo sac development arrest 18, RING/U-box superfamily protein (.1) Potri.001G074800 [exp] 122 / 4e-28 AT1G30860 179 / 1e-46 RING/U-box superfamily protein (.1) Potri.010G030600 [exp] 56 / 5e-08 AT3G06140 344 / 7e-117 RING/U-box superfamily protein (.1) Potri.008G202700 [exp] 54 / 4e-07 AT5G19080 340 / 4e-115 RING/U-box superfamily protein (.1) Potri.005G036400 [exp] 53 / 7e-07 AT3G06140 296 / 2e-97 RING/U-box superfamily protein (.1) Potri.008G167600 [exp] 50 / 4e-06 AT3G23280 501 / 1e-175 XB3 ortholog 5 in Arabidopsis thaliana (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038656 pacid=23143056 polypeptide=Lus10038656 locus=Lus10038656.g ID=Lus10038656.BGIv1.0 annot-version=v1.0 ATGACCGACTTTCAAACGGCACAGCAGAAACCAGATTCCACCACGAGTGATGATCGTGTGGAATTTGAGAGGGGATGGGAGGAGTTGATGCGAGGCCACT TAGATGATTGTATGTCATTTTCTTCCTGTAGCTCTACTCGTACCCGGGATGGTGGCGAAGATGACGATGGAGATCAGCTTGTTCGCAGGAGAAGAAGGTC TGATCTTGAAGGTGATGATTTGGCCGAGTCCTCTGCTGCCAGGAGGCGCCACTCCCGCATTCTCAGCAGGTGGGCTGCTAGGCAGGCACAAGAGATGATC ACCACCATTGAGAGGAGGAATCGCGAGTCCGAGTTAATGGCACTGGCAGGTCTACACACAGTTTCCATGCTTGATTCCTCTTTCTTAAGGGACTCACAGT CACCCCCTCCCACTCCCAGAAGGCAGGGAGCTGCTGAACGGCCAAGCACTCGGGCATCATCAATTTTGCAAATGTGGCGGGAGTTGGAAGATGAGCATGT GTTGAACAGGGCCCGCGAGAGGGTGAGGGAGAGGGAGCGATTGAGGCAGCAAACAAGTGTGGATTCTCATTCTCCTCCTAATGCTTCCAATACAAACATG TCTGAGGCTCAAGGAAGTGAGAATCAGGGTAGCTTGGGGGATGTAAGCAGTGAAACCGAGTTTGGACCGTGGTCGCCTGAGCAAATGGTTCCCCGGGCTG AGCGTGGGGATGATGATGGCTCTAGTAGGGAGCAGTCTCCTGATCTTGGAGAATTTGAGCGGGAAAGGGTGAGGCAGATTGCTCGTGGGTGGATGAATAG TGGTATTAGCAGTGATCATGCATCTAATGTATCCCAACGGAATGGTGGTAGTAGAGCAGAGTGGCTTGGTGAAACAGAACGTGAGAGGGTGAGACTTGTG AGGCAGTGGGTGCAGATGACAAGTCAACAGCGGGGCCCACGTGGGGGACGAAGGGATTCTCAAGTCACTGGAGATCAGGAAAGTTCAGTTGCTGATCCTG ATGAAGGCCAACCAGAACACGTTCGTCGGGACATTCTCAGACTGCGTGGCCGACAAGCTGTTATTGATTTGCTTATGAGGATTGAGAGGGAAAGGCAGCG TGAGCTTCAGGGATTGTTGGAACATAGAGCTGTCTCTGAATTTGCTCACCGCAATCGTATTCAGTCATTATTGAGGGGTAGATTCCTCCGAAATGAAGGC ACCGTTGAAGAAGAGAGATCACCTTCAGTGGCTACAACTGAATTAGTTCAATTAAGACAGCGGCACACGGTATCTGGCATAAGGGAAGGATTTCGTTCGA GGTTGGAAAATATTGTCCGCGGACAAGTAAGCAGCCAAACGGATACTCCTGATAATGACTCTAGAAATGGTCAGAATCAAACAGATACTTCACAGGATGT TCAACATGAAGATAGTGTTCAATCTGAACCTAGGACTCAAGAAAATGATGTCCAACTGTCACCTGATCAGACCGCGACCTCAGAAAGTAATACGCCCATT GATAACATGAATTGGCAGGAAACTGTTAATCAGGTTCGTGGTTGGCCGGAAGAAATTACGGACAACAGTGGGGAAAACTGGCAACAATTAGATTATGGTC CTTTCAATGAATGGAGAGATGGCGGTGCTGAACCAGTGGATCGAAATTGGCCCGAGGAAACACCTGGTAATGTACATAATGAACCAGGTCGTCCACGGGA AGCCCAGGGAGTTTGGCATGAAGATGGCTCTCAGGAGGCAGTAGAAACGTGGATAGAGAGGCCTTCTGATCCACCAAGAGCTCGCCGTACTGTTCCAGTG AGAAGGTTTAGTAGATTTCACCCTCCAGATGATGAAAATGTGTACAGTATGGAGCTTAGAGAGTTATTGAGCAGGCGAAGTGTATCTAATCTGCTTCGGA GTGGTTTCCGTGAAAGTCTGGACCATTTGATACAATCATATGTGGAGAGACAAGGTCGTCCTCCCATTGACTGGGATGTTCACAGAAACTTGCCAATACA AAATCCTACATCCCCAGAGCAGGATGAAGAGCAACAGATCAGAAATGAACCTAACGAGGACCAGCGTGCTGCAGTAAATAGATCATCAACGGCTCTTCGG CCTCCACCAGTGCCACCACCTCAGCCTCTCTGGCACCAGGATTTACACCACACAGGCTGGTCTAGGCATAGCATGCATCGATCTGAACTCGAGTGGGAAA TGCTTAATGATCTGAGAGCAGACATGGCGAGACTTCAGCAAGGAATGAGCCAAATGCAGAGAACCCTGGAGGCTTGCATGGATATGCAACTGGAGCTGCA GCGTTCTGTTAGACAGGAAGTGTCTGCAGCTCTGAATCGATCAGCTGGAGAAAAAGGAATGAGTGCAGGGACATCGGAGGATGGGTCAAATTGGGGTCAA GTGAGGAAAGGGACTTGTTGCATATGTTGTGATAGCCAAATAGATTCTTTATTGTACAGGTGTGGGCACATGTGCACTTGTTCAAAGTGTGCAAACGAAC TGGTACGCGGTGGTGGTAAGTGCCCGTTGTGTCGTGCACCGATTGTAGAAGTGATAAGAGCATATTCCATACTCTAA
AA sequence Show only first row Show all	>Lus10038656 pacid=23143056 polypeptide=Lus10038656 locus=Lus10038656.g ID=Lus10038656.BGIv1.0 annot-version=v1.0 MTDFQTAQQKPDSTTSDDRVEFERGWEELMRGHLDDCMSFSSCSSTRTRDGGEDDDGDQLVRRRRRSDLEGDDLAESSAARRRHSRILSRWAARQAQEMI TTIERRNRESELMALAGLHTVSMLDSSFLRDSQSPPPTPRRQGAAERPSTRASSILQMWRELEDEHVLNRARERVRERERLRQQTSVDSHSPPNASNTNM SEAQGSENQGSLGDVSSETEFGPWSPEQMVPRAERGDDDGSSREQSPDLGEFERERVRQIARGWMNSGISSDHASNVSQRNGGSRAEWLGETERERVRLV RQWVQMTSQQRGPRGGRRDSQVTGDQESSVADPDEGQPEHVRRDILRLRGRQAVIDLLMRIERERQRELQGLLEHRAVSEFAHRNRIQSLLRGRFLRNEG TVEEERSPSVATTELVQLRQRHTVSGIREGFRSRLENIVRGQVSSQTDTPDNDSRNGQNQTDTSQDVQHEDSVQSEPRTQENDVQLSPDQTATSESNTPI DNMNWQETVNQVRGWPEEITDNSGENWQQLDYGPFNEWRDGGAEPVDRNWPEETPGNVHNEPGRPREAQGVWHEDGSQEAVETWIERPSDPPRARRTVPV RRFSRFHPPDDENVYSMELRELLSRRSVSNLLRSGFRESLDHLIQSYVERQGRPPIDWDVHRNLPIQNPTSPEQDEEQQIRNEPNEDQRAAVNRSSTALR PPPVPPPQPLWHQDLHHTGWSRHSMHRSELEWEMLNDLRADMARLQQGMSQMQRTLEACMDMQLELQRSVRQEVSAALNRSAGEKGMSAGTSEDGSNWGQ VRKGTCCICCDSQIDSLLYRCGHMCTCSKCANELVRGGGKCPLCRAPIVEVIRAYSIL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04460			RING/U-box superfamily protein...		Lus10038656 [exp]	0	1
AT5G04930		ALA1	aminophospholipid ATPase 1 (.1...		Lus10028873 [exp]	2.2	0.7924
AT5G04460			RING/U-box superfamily protein...		Lus10037928 [exp]	3.2	0.8326
AT2G17970			2-oxoglutarate (2OG) and Fe(II...		Lus10041917 [exp]	6.5	0.8306
AT5G08200			peptidoglycan-binding LysM dom...		Lus10010198 [exp]	7.2	0.8013
AT1G15060			Uncharacterised conserved prot...		Lus10043481 [exp]	7.3	0.7893
AT2G39290		PGP1, PGS1, PGP...	phosphatidylglycerolphosphate ...		Lus10040348 [exp]	10.6	0.7885
AT5G15880			unknown protein		Lus10034091 [exp]	11.4	0.7627
AT4G38670			Pathogenesis-related thaumatin...		Lus10041108 [exp]	11.6	0.7253
AT2G28310			Protein of unknown function (D...		Lus10016095 [exp]	12.5	0.7296
AT5G45360			F-box family protein (.1)		Lus10037278 [exp]	13.0	0.7275

Compare expression of checked genes

Lus10038656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.