Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G06920 328 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 125 / 9e-33 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G11690 115 / 2e-29 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G12620 115 / 3e-29 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02150 112 / 5e-28 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G12300 111 / 6e-28 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G06710 110 / 1e-27 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G39710 110 / 2e-27 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G16710 104 / 2e-25 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 104 / 2e-25 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043417 [exp] 394 / 8e-132 AT3G06920 1358 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10011464 [exp] 119 / 1e-30 AT3G16010 888 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10040633 [exp] 113 / 2e-28 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10023863 [exp] 110 / 2e-27 AT5G12100 728 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10014242 [exp] 107 / 1e-26 AT1G62930 256 / 5e-78 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003424 [exp] 105 / 8e-26 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10007468 [exp] 105 / 9e-26 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003433 [exp] 105 / 1e-25 AT1G12700 396 / 2e-129 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Lus10025533 [exp] 105 / 2e-25 AT1G06710 980 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G014100 [exp] 345 / 2e-113 AT3G06920 1404 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G180000 [exp] 121 / 3e-31 AT3G16010 950 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.016G025600 [exp] 114 / 1e-28 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.014G117600 [exp] 112 / 2e-28 AT1G12700 330 / 1e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.007G123600 [exp] 112 / 3e-28 AT1G06710 1248 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G130600 [exp] 111 / 4e-28 AT1G12700 330 / 3e-105 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1) Potri.004G013300 [exp] 110 / 1e-27 AT3G53700 1092 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 110 / 2e-27 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.010G035700 [exp] 109 / 3e-27 AT1G05670 922 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) Potri.014G090400 [exp] 109 / 4e-27 AT5G28460 637 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10038657 pacid=23143036 polypeptide=Lus10038657 locus=Lus10038657.g ID=Lus10038657.BGIv1.0 annot-version=v1.0 ATGTATACTCATCCCTCATTTGCAACTTTTGAGCATGACAGGAAAGAGGAGTGCCACAAGATATACAAAGAAATGATCCAAAGAGGCTGTTCACCTGATC TTGTCCTTCTTAACACCTACATGGATTGTGCTTTCAAAGCCGGTGAAGGTGAAAAGGGGAGGAGTTTATTTGAGGAGATAAGGGCTTGTGGACTTGTTCC AGATATTAGAAGCTATTCTATCCTCATTCATAGCCTGATCAAAGCTGATTTTGCATGTGAAACCTATGAACTGTTCTACTCTATGAAAGACCAAGGCTGT TGTGTATTGGACACTCGTGCCTACAACACTATTATTGATGGGTTTTGCAAGTCAGGGAAAGTAAATAAAGCTTATCAGCCTCTAGATGAGTTGAAGACAA AAGGCCACCATCGAACAGTAGTCACCTATGGTTCAGTCATTGACAGCCTTTGCAAAATTGACAGACTTGATGTAGCATACATGCTGTTTGAAGAAACAAG AGATGGTGTAGAAAGGCTCGATGCACTCGTGAAAGCAGAAAAAATTGACGAGGCTGTGGTTTGCTTTCGGCACATGAAGGACCTCGGGTGCATTCCGAAT CAAATAACATACAGTATCCTCATAAACGGTCTCGGTAGACTCAAGAAATTCACAAAGGCCTTTGTATTCTGGCAAAAGATGCAGAAGCAAGGGTTGAAGC CAAATACTATCACCTCTTGCCAAGGCAGGTAA
AA sequence Show only first row Show all	>Lus10038657 pacid=23143036 polypeptide=Lus10038657 locus=Lus10038657.g ID=Lus10038657.BGIv1.0 annot-version=v1.0 MYTHPSFATFEHDRKEECHKIYKEMIQRGCSPDLVLLNTYMDCAFKAGEGEKGRSLFEEIRACGLVPDIRSYSILIHSLIKADFACETYELFYSMKDQGC CVLDTRAYNTIIDGFCKSGKVNKAYQPLDELKTKGHHRTVVTYGSVIDSLCKIDRLDVAYMLFEETRDGVERLDALVKAEKIDEAVVCFRHMKDLGCIPN QITYSILINGLGRLKKFTKAFVFWQKMQKQGLKPNTITSCQGR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G06920			Tetratricopeptide repeat (TPR)...		Lus10038657 [exp]	0	1
AT4G33920			Protein phosphatase 2C family ...		Lus10000700 [exp]	2.8	1.0000
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10004882 [exp]	4.0	1.0000
AT1G66950		ABCG39, PDR11, ...	ATP-binding cassette G39, plei...		Lus10006277 [exp]	4.9	1.0000
AT2G29670			Tetratricopeptide repeat (TPR)...		Lus10025981 [exp]	5.7	1.0000
AT5G51740			Peptidase family M48 family pr...		Lus10032437 [exp]	6.3	1.0000
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Lus10016711 [exp]	6.9	1.0000
AT1G35670		CPK11, ATCDPK2,...	calcium-dependent protein kina...		Lus10017911 [exp]	7.0	1.0000
					Lus10026426 [exp]	7.1	0.9602
AT2G37360		ABCG2	ATP-binding cassette G2, ABC-2...		Lus10039859 [exp]	7.9	1.0000
AT4G20060		EMB1895	EMBRYO DEFECTIVE 1895, ARM rep...		Lus10038371 [exp]	8.0	1.0000

Compare expression of checked genes

Lus10038657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.