Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04440 345 / 9e-121 Protein of unknown function (DUF1997) (.1) AT4G31115 97 / 7e-24 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037929 [exp] 450 / 1e-161 AT5G04440 342 / 1e-118 Protein of unknown function (DUF1997) (.1) Lus10026864 [exp] 94 / 1e-22 AT4G31115 244 / 2e-81 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10018151 [exp] 67 / 3e-13 AT4G31115 156 / 1e-47 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2) Lus10025683 [exp] 67 / 4e-13 AT4G31115 159 / 1e-48 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G030300 [exp] 356 / 3e-125 AT5G04440 342 / 5e-120 Protein of unknown function (DUF1997) (.1) Potri.010G230900 [exp] 342 / 6e-120 AT5G04440 330 / 2e-115 Protein of unknown function (DUF1997) (.1) Potri.005G179800 [exp] 92 / 4e-22 AT4G31115 205 / 4e-66 Protein of unknown function (DUF1997) (.1), Protein of unknown function (DUF1997) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09366 [flax] [poplar] DUF1997 Protein of unknown function (DUF1997)
Representative CDS sequence Show only first row Show all	>Lus10038659 pacid=23143155 polypeptide=Lus10038659 locus=Lus10038659.g ID=Lus10038659.BGIv1.0 annot-version=v1.0 ATGGCTCTCTACAGTTCCTCTGCTACTCTCGCCGGTGGCATTTTGCCCTCCATTTCTCTCCGATCCGGCGCCGGGAACAACACCCACAGTTGCCTCTTCA CTCATAACTTTGCTTCTTTCTCCCACCATGACCACCACTACTCCTCCTCCCCATCTTCTTCTTCCACTACATTCGCCTCCTTGCGAGTTTCTGCCGATTC GACTCCCAAAGCCCGCTTCGTGGCACGCCGGAAGGAATCTATCTCCGTCCGCCAACTTGGGCGCCCTCTAATTGAGTATATGAGCTTGCCGGCGAGTCAG TACTCGGTGTTGGATGCGGAGAGGATAGAGAGGGTAGATGACGACACCTTCAGGTGTTATGTGTACAGGTTCAAGTTTTTCAATTTTGAAGTTTGCCCTG TTTTGCTCGTTAAGGTCGAGGAGCAGCCCAATGGCTGTTGCATTAACCTCTTGTCTTGTAAGCTTGAGGGTTCACCAATTGTCGTCGCACAGAATGACAA ATTTGATGCTTCGATGGTGAACCAGATCTCATGTGATACCAGCCAAAGCAATACGGAGGGACAACAACTTATTTCTGATGCTGTTATTGAGGTAAGCATC GAGATTCCTTTCGCATTTAGGGTAATTCCAGTGGAAGCAATCGAGTCAGCTGGGACTGGGGTTCTGCAGCAGATACTGGGTGTCATGCTTCCCCGATTTA TGCAGCAGCTTGTGAAAGACTATAAAGCGTGGGCTGCCGGTGATACCTCAAGACAGGCTCTTGGAACGGGCGAGATCTGA
AA sequence Show only first row Show all	>Lus10038659 pacid=23143155 polypeptide=Lus10038659 locus=Lus10038659.g ID=Lus10038659.BGIv1.0 annot-version=v1.0 MALYSSSATLAGGILPSISLRSGAGNNTHSCLFTHNFASFSHHDHHYSSSPSSSSTTFASLRVSADSTPKARFVARRKESISVRQLGRPLIEYMSLPASQ YSVLDAERIERVDDDTFRCYVYRFKFFNFEVCPVLLVKVEEQPNGCCINLLSCKLEGSPIVVAQNDKFDASMVNQISCDTSQSNTEGQQLISDAVIEVSI EIPFAFRVIPVEAIESAGTGVLQQILGVMLPRFMQQLVKDYKAWAAGDTSRQALGTGEI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04440			Protein of unknown function (D...		Lus10038659 [exp]	0	1
AT4G18810			NAD(P)-binding Rossmann-fold s...		Lus10029255 [exp]	3.2	0.9149
					Lus10018336 [exp]	5.5	0.8525
AT5G22830		MRS2-11, GMN10,...	MAGNESIUM TRANSPORTER 10, magn...		Lus10020517 [exp]	6.0	0.9052
AT2G21340			MATE efflux family protein (.1...		Lus10041955 [exp]	6.3	0.8995
AT5G20380		PHT4;5	phosphate transporter 4;5 (.1)		Lus10008039 [exp]	7.3	0.8352
AT1G11960			ERD (early-responsive to dehyd...		Lus10024477 [exp]	8.7	0.8591
AT4G25290			DNA photolyases;DNA photolyase...		Lus10031716 [exp]	8.9	0.8814
AT5G57180		CIA2	chloroplast import apparatus 2...		Lus10015538 [exp]	9.5	0.8716
AT3G49190			O-acyltransferase (WSD1-like) ...		Lus10017718 [exp]	10.9	0.8925
AT4G12110		ATSMO1-1, SMO1-...	sterol-4alpha-methyl oxidase 1...		Lus10004321 [exp]	11.7	0.8628

Compare expression of checked genes

Lus10038659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.