Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004993 [exp] 87 / 2e-20 ND / Lus10019564 [exp] 68 / 2e-15 ND / Lus10007776 [exp] 49 / 3e-07 ND / Lus10035109 [exp] 40 / 0.0004 AT4G24190 309 / 5e-98 SHEPHERD, HEAT SHOCK PROTEIN 90-7, Chaperone protein htpG family protein (.1.2) Lus10043270 [exp] 0 / 1 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038660 pacid=23142998 polypeptide=Lus10038660 locus=Lus10038660.g ID=Lus10038660.BGIv1.0 annot-version=v1.0 ATGTCGAGGAAGGTCACATATTGCATAAAGGACCACTACTGGCGGGGAGATGCTTTGGCACTAGGCTCCCTCACAAAGGAGCCATCATTGGAGCCACCCA GAAAAGTTGGGATAGCTTTGGCCTCCACGATATGCTCTGATGGGGCTCAAACATGGGATGGCAACGACGGAACAGAGGAGGTATGTTTTAAAAACATCCC TCTATGGATTTTGATACACAAAATACCGTGGAAATACCGGTCAGATGACACGTTCAAGGGAATCGCAACAATCTACTTTCCTGCGCTCCTTGACGTTGAT GAGACCATAATGGATCTAACAAGATGGACGAGGACGGTGAAGGTCCGGGTCGACGTAACGATCGATGATCCCCTGACACCAGGCTTTGTCATGCAAATCC CTGAAGGGGAAGGCACTCATAGGGTCACGTTTCAGTACAAAGGATTGCAGGAACTCTGTGTCTACTATGGCCGCATAAGTCACGAAATGGTCCACTGGGA GGAATTAAGGAGACACTTGTGA
AA sequence Show only first row Show all	>Lus10038660 pacid=23142998 polypeptide=Lus10038660 locus=Lus10038660.g ID=Lus10038660.BGIv1.0 annot-version=v1.0 MSRKVTYCIKDHYWRGDALALGSLTKEPSLEPPRKVGIALASTICSDGAQTWDGNDGTEEVCFKNIPLWILIHKIPWKYRSDDTFKGIATIYFPALLDVD ETIMDLTRWTRTVKVRVDVTIDDPLTPGFVMQIPEGEGTHRVTFQYKGLQELCVYYGRISHEMVHWEELRRHL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G36228			nucleic acid binding;zinc ion ...		Lus10038660 [exp]	0	1
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10000605 [exp]	16.4	0.6715
AT4G24330			Protein of unknown function (D...		Lus10019958 [exp]	43.3	0.6566
AT3G48950			Pectin lyase-like superfamily ...		Lus10039279 [exp]	48.8	0.6113
AT1G54460			TPX2 (targeting protein for Xk...		Lus10022003 [exp]	82.1	0.5897
AT1G06230		GTE4	global transcription factor gr...		Lus10007096 [exp]	93.6	0.5941
AT5G53760		ATMLO11, MLO11	MILDEW RESISTANCE LOCUS O 11, ...		Lus10032669 [exp]	99.2	0.6180
					Lus10033375 [exp]	140.6	0.5368
AT2G23690			unknown protein		Lus10016785 [exp]	151.7	0.5615
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10040029 [exp]	221.8	0.5229

Compare expression of checked genes

Lus10038660 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.