Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G52380 100 / 1e-24 NUP50 (Nucleoporin 50 kDa) protein (.1) AT3G15970 100 / 2e-24 NUP50 (Nucleoporin 50 kDa) protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037931 [exp] 283 / 5e-94 AT3G15970 343 / 7e-114 NUP50 (Nucleoporin 50 kDa) protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G179100 [exp] 129 / 1e-34 AT1G52380 326 / 4e-107 NUP50 (Nucleoporin 50 kDa) protein (.1) Potri.003G056400 [exp] 122 / 7e-32 AT1G52380 225 / 7e-68 NUP50 (Nucleoporin 50 kDa) protein (.1) Potri.009G060901 [exp] 0 / 1 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF08911 [flax] [poplar] NUP50 NUP50 (Nucleoporin 50 kDa)
Representative CDS sequence Show only first row Show all	>Lus10038663 pacid=23143108 polypeptide=Lus10038663 locus=Lus10038663.g ID=Lus10038663.BGIv1.0 annot-version=v1.0 ATGGGGGATTCTGAAAATGTCCTTCCACCTTCAAAGAAGAGAGCTGCAGGTCGGGAGATATCCAAGGACAACCCTGGTCTTGATGATGACGAAGATTTGT CTGAAATGGAGGCTGGAACTTTCAAGAAGGCCAGTGATGAGGTTCTTGCTACTAGAAGAATTGTGAAAGTTCGGCGCAGTCAATCAACTGCAACCTCCTC AGTCCCGAAAGCCCCCTCGTCCAATCCATTTGCTGGGATTTGTTTGGTTTCACCAAGTGGTCCAACAGCAGTTCCTCAGTCGGGTACAGTAGTAGGAGCA ACTTCAATTGAGAAAGCTTCAAGTGATATTAAAGATGTTGCTTCTGATGTGACTAAGGAATCTGAAAATGATGCTGATAAGAAGCATGGAGAAAGCAATG TGAATGATTTGGTCGTTGAAACTACTGCTGGGAATGAGACCGCTCAAAATAAGGTGAATGCTGACCCAGTAAGTGAAGGGGCAAAACCCATCAAACATTC TGAGGAACCTTTAAAAGATAAAGCTGAGAGACAGCTTACTAACATGGACAAGCGAGGCATCACTTTTGCTTGCATAAACAGCGTCGGTGAAGGTAAAGAA GCACTTTCAACCTTTGCTCTCAAGTTCAGGGATGGTTCTATCGTCGAAGAATTTCGTGCAGCTGTGATTCAACACAAAGATCACAACACTTCAGGAGTTC TCAAGACACCAGAGAACTCCCCTTAA
AA sequence Show only first row Show all	>Lus10038663 pacid=23143108 polypeptide=Lus10038663 locus=Lus10038663.g ID=Lus10038663.BGIv1.0 annot-version=v1.0 MGDSENVLPPSKKRAAGREISKDNPGLDDDEDLSEMEAGTFKKASDEVLATRRIVKVRRSQSTATSSVPKAPSSNPFAGICLVSPSGPTAVPQSGTVVGA TSIEKASSDIKDVASDVTKESENDADKKHGESNVNDLVVETTAGNETAQNKVNADPVSEGAKPIKHSEEPLKDKAERQLTNMDKRGITFACINSVGEGKE ALSTFALKFRDGSIVEEFRAAVIQHKDHNTSGVLKTPENSP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G52380			NUP50 (Nucleoporin 50 kDa) pro...		Lus10038663 [exp]	0	1
AT1G49600		ATRBP47A	RNA-binding protein 47A (.1)		Lus10012071 [exp]	2.0	0.8372
AT5G41190			unknown protein		Lus10008488 [exp]	9.5	0.8081
AT4G11630			Ribosomal protein L19 family p...		Lus10017958 [exp]	15.2	0.8169
AT5G39840			ATP-dependent RNA helicase, mi...		Lus10034867 [exp]	16.6	0.8136
AT3G15970			NUP50 (Nucleoporin 50 kDa) pro...		Lus10037931 [exp]	16.6	0.7792
AT4G36130			Ribosomal protein L2 family (....		Lus10028468 [exp]	17.2	0.8270
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10016981 [exp]	19.2	0.7875
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10031477 [exp]	20.5	0.8315
AT2G03820			nonsense-mediated mRNA decay N...		Lus10023975 [exp]	23.1	0.7419
AT4G38150			Pentatricopeptide repeat (PPR)...		Lus10026570 [exp]	23.4	0.7589

Compare expression of checked genes

Lus10038663 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.