Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04430 331 / 2e-113 BTR1S, BTR1L, BTR1 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) AT2G25970 45 / 5e-05 KH domain-containing protein (.1) AT4G10070 45 / 8e-05 KH domain-containing protein (.1) AT3G04610 41 / 0.001 FLK flowering locus KH domain, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037932 [exp] 457 / 3e-163 AT5G04430 449 / 4e-160 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Lus10034831 [exp] 45 / 5e-05 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10004445 [exp] 44 / 0.0001 AT2G25970 309 / 3e-100 KH domain-containing protein (.1) Lus10002947 [exp] 43 / 0.0003 AT4G10070 426 / 1e-138 KH domain-containing protein (.1) Lus10003519 [exp] 42 / 0.0004 AT4G10070 399 / 4e-128 KH domain-containing protein (.1) Lus10020998 [exp] 42 / 0.0007 AT2G25970 253 / 2e-76 KH domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230500 [exp] 363 / 4e-126 AT5G04430 405 / 9e-143 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.008G030700 [exp] 352 / 3e-121 AT5G04430 406 / 1e-142 BINDING TO TOMV RNA 1S \(SHORT FORM\), binding to TOMV RNA 1L (long form) (.1), binding to TOMV RNA 1L (long form) (.2) Potri.019G072500 [exp] 48 / 6e-06 AT4G10070 370 / 2e-117 KH domain-containing protein (.1) Potri.013G099800 [exp] 46 / 3e-05 AT4G10070 303 / 5e-92 KH domain-containing protein (.1) Potri.010G251700 [exp] 45 / 5e-05 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.018G055300 [exp] 44 / 0.0002 AT2G25970 319 / 9e-100 KH domain-containing protein (.1) Potri.006G231800 [exp] 43 / 0.0002 AT2G25970 393 / 5e-128 KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [flax] [poplar] KH PF00013 [flax] [poplar] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Lus10038665 pacid=23143092 polypeptide=Lus10038665 locus=Lus10038665.g ID=Lus10038665.BGIv1.0 annot-version=v1.0 ATGGATTCAACTGAGTCGTCCTACATGTCCTCACCGGAGGCTCAGGGGAAAAAATCTCCTCCACCGCCCAAATCACCTACTTCAGATACCACGGAGAAGA CGGCATATATCAAATTTCTTGTGTCCAATGCTGCAGCTGGTTCCGTGATTGGGAAGGGTGGCTCTACAATTACTGACTTTCAGACACAGTCTGGAGCTAG GATTCAGTTATCACGCAACTATGAATTTTTTCCAGGGACTTCTGATAGAATAATTATGATCTCTGGAAATATTGAGGATGTGCTAAAAGCTGTTGACCTT GTTCTTGCTAAACTGCTTAGTGAGCTTCATCCTGAAGATGGTGGGGATGCTGAACCAAGAATGAAAGTGAGACTAATTGTTCCAAATGGCTCTTGTGGTA GCATTATTGGGAAAGGGGGGGCCATTATCAAGTCATTCATTGAAGAATCCCAAGCAGGCATTAAGATATCCCCGCTGGACCATAACTTTTATGGGCTGAA TGATAGGCTAGTGACCCTAACAGGTACTTTGGATGAGCAGATGCGTGCAACTGAAATGATTTTGTCAAAGTTAACTGAAGATCCTCACTACTCACAGAGC ATGCATACGCCATTCTCGTATGTTGCAGCAGCGGCACCAGCACCTTACAATGCGGTGAACTATGCAGGACAAAATGGGGGTGGAGGAAAGTTCCAGAATA ACAAGGAGGACCGCTCCAACTCGGTAACAATTGGTGTGGCTGATGAGCACATTGGACTGGTGGTTGGCCGTGGTGGAAGGAACATAATGGAGATTAGCCA GGTGAGTGGAGGAAAGATAAAAATATCAGACAGAGGTGACTTCATGACCGGGACGAATGACAGGAAAGTGACGATCACTGGGTCGCAAAGAGCAGTACGA ACAGCGCAAGACATGATAATGCAGAAGGTAGCTAGTGCTTCAGAGAGAGGAAACGAACAGCTTTGA
AA sequence Show only first row Show all	>Lus10038665 pacid=23143092 polypeptide=Lus10038665 locus=Lus10038665.g ID=Lus10038665.BGIv1.0 annot-version=v1.0 MDSTESSYMSSPEAQGKKSPPPPKSPTSDTTEKTAYIKFLVSNAAAGSVIGKGGSTITDFQTQSGARIQLSRNYEFFPGTSDRIIMISGNIEDVLKAVDL VLAKLLSELHPEDGGDAEPRMKVRLIVPNGSCGSIIGKGGAIIKSFIEESQAGIKISPLDHNFYGLNDRLVTLTGTLDEQMRATEMILSKLTEDPHYSQS MHTPFSYVAAAAPAPYNAVNYAGQNGGGGKFQNNKEDRSNSVTIGVADEHIGLVVGRGGRNIMEISQVSGGKIKISDRGDFMTGTNDRKVTITGSQRAVR TAQDMIMQKVASASERGNEQL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10038665 [exp]	0	1
AT2G34060			Peroxidase superfamily protein...		Lus10005278 [exp]	4.9	0.9253
AT5G19150			pfkB-like carbohydrate kinase ...		Lus10021933 [exp]	7.0	0.8915
AT2G37270		ATRPS5B	ribosomal protein 5B (.1.2)		Lus10000946 [exp]	7.2	0.9407
AT1G75330		OTC	ornithine carbamoyltransferase...		Lus10010641 [exp]	8.1	0.9375
AT2G15480		UGT73B5	UDP-glucosyl transferase 73B5 ...		Lus10014080 [exp]	8.3	0.9020
AT5G43500		ATARP9	actin-related protein 9 (.1.2)		Lus10022198 [exp]	9.7	0.9262
AT4G00100		PFL2, ATRPS13A	POINTED FIRST LEAF 2, ribosoma...		Lus10031704 [exp]	11.7	0.9354
AT5G04430		BTR1S, BTR1L, B...	BINDING TO TOMV RNA 1S \(SHORT...		Lus10037932 [exp]	12.5	0.9354
AT2G14530		TBL13	TRICHOME BIREFRINGENCE-LIKE 13...		Lus10012477 [exp]	20.4	0.9088
AT1G76160		SKS5	SKU5 similar 5 (.1)		Lus10035282 [exp]	23.7	0.9076

Compare expression of checked genes

Lus10038665 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.