Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04420 647 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT3G05420 458 / 2e-155 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 442 / 1e-149 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 197 / 2e-55 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G18610 118 / 4e-28 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 107 / 1e-24 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 88 / 3e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT4G04670 81 / 1e-15 Met-10+ like family protein / kelch repeat-containing protein (.1) AT1G68050 77 / 8e-15 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT5G57360 76 / 2e-14 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037933 [exp] 970 / 0 AT5G04420 648 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 769 / 0 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 761 / 0 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029902 [exp] 462 / 5e-157 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 443 / 3e-149 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 441 / 1e-148 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 438 / 1e-147 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 183 / 1e-50 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 169 / 3e-45 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031200 [exp] 738 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 729 / 0 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G026900 [exp] 446 / 1e-150 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 445 / 3e-150 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G214900 [exp] 214 / 2e-61 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 212 / 1e-60 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G030901 [exp] 180 / 1e-54 AT5G04420 120 / 1e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 129 / 8e-32 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 125 / 2e-30 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 110 / 9e-26 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10038666 pacid=23142987 polypeptide=Lus10038666 locus=Lus10038666.g ID=Lus10038666.BGIv1.0 annot-version=v1.0 ATGAAGGGTGTAGATGTGGGTAATTGGTTTTCACAATTGGCGTATGAACAGTGGGAGCCAATTCCTGTTTCTGGCCCAAGACCATCAGCTCGCTACAAGC ATGCCTCGGCAATCAATGGAGATAAGTTATACATATTTGGCGGTAGTCGTAATGGCCGGTACCTATCTGATATACAGGTCTTTGATTTTGGAAGTTTGAC TTGGTCTAGCCTTAAACCCAAGATTGAATTGAACAGTTACGGAGTGGAGGAAAGCAGATCACAAGAAACTCTTCCAGCCATGTCAGACCACAGCATGGTG GTATGGGGAAACAAACTGCTGCTACTCAGTGGCCATTCCAAAGACTCTTCTGAAAGCATGATAGTGCACTTCATAAATTTAGAAACACAACGATGTGGTA TCCTTGAAACCTCAGGAAATTTTCCATGTGCTCGAGGGGGATACTCTGCTACCCTTGTTGGTTCTAGGCTGGTGATTTTTGGGGGGGGAGATAGAAGTAG GAAACTGTTGAATGACATACATATCCTTAATCTTGAAACATTGACGTGGGATTTGGTGGAAACCATGCAGACATCTCCAGTTCCACGATTTGACCACACG GCAGCAGTACATGCAGAGCACTACCTTTTGGTATTTGGTGGTTGTTCTCATTCGATATTCTTCAACGATCTTCATGTACTTGACCTGCAGACTTTGGAGT GGAGCCAGCCGGAGATTCAAGGAGACTTGGTGACTCCTAGGGCGGGTCACACTGGCGTAACCATTGATGAGAATTGGTATATCGTGGGTGGTGGAGATAA TAAGAACGGTTCTTTAGAGACTCTTTCTTTAAATATGTCCAAGCTTGCTTGGTCGACGTTGACCAGTGTAAAGGAAAGGCATCCACTTGCCAGTGAGGGG CTAAGTGTTTGCTCAGCATTCATCAATGGGGAGAAGCACTTGGTTGCTTTTGGTGGCTATAATGGGAAATATACTAACGAGGTCTTTGTTCTGCGACTGA AACCGAGAGACACGTTACGGCCCAAGATTTTTCAGTCACCAGCAGCTGCTGCAGCAGCTGCTTCTGTGACAGCTGCATACGCGTTGGCCAAATCTGAGAA GTTGGATATTTCCTACTTGGCTGCAAATCCTAGAGAACAAGGGAAAAAGCCTTCTCACGAAGATCTCGGTATCGAAATTGATGCAATCAAAGAAGACAAA AAGATGCTGGAAGCGTCACTAGCAGATGTCAAAGCAGATAATTCTAGGAACAGAGAAAAGATCGATGAAGTTAACAGTACCCATGCTGATTTATCCAAGG AACTCCATTCTGTCCAAGGACAATTGGTGACTGAAAGATCTAGATGCTTCAAACTCGAGGCACAAATTGCCGAGCTACAGAAAGCACTAGAGTCATTGCA GTCCATAGAGACAGAAGTCCAACTACTCCGGAGACAGAAAGCGGTGATTGAGCAGGAGATTGAGATGAATGCAAGCGCACAAAGGCAAGGCTCCGGTGTC TGGCGTTGGATAGCTGGATGA
AA sequence Show only first row Show all	>Lus10038666 pacid=23142987 polypeptide=Lus10038666 locus=Lus10038666.g ID=Lus10038666.BGIv1.0 annot-version=v1.0 MKGVDVGNWFSQLAYEQWEPIPVSGPRPSARYKHASAINGDKLYIFGGSRNGRYLSDIQVFDFGSLTWSSLKPKIELNSYGVEESRSQETLPAMSDHSMV VWGNKLLLLSGHSKDSSESMIVHFINLETQRCGILETSGNFPCARGGYSATLVGSRLVIFGGGDRSRKLLNDIHILNLETLTWDLVETMQTSPVPRFDHT AAVHAEHYLLVFGGCSHSIFFNDLHVLDLQTLEWSQPEIQGDLVTPRAGHTGVTIDENWYIVGGGDNKNGSLETLSLNMSKLAWSTLTSVKERHPLASEG LSVCSAFINGEKHLVAFGGYNGKYTNEVFVLRLKPRDTLRPKIFQSPAAAAAAASVTAAYALAKSEKLDISYLAANPREQGKKPSHEDLGIEIDAIKEDK KMLEASLADVKADNSRNREKIDEVNSTHADLSKELHSVQGQLVTERSRCFKLEAQIAELQKALESLQSIETEVQLLRRQKAVIEQEIEMNASAQRQGSGV WRWIAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04420			Galactose oxidase/kelch repeat...		Lus10038666 [exp]	0	1
AT4G01290			unknown protein		Lus10007916 [exp]	12.3	0.6777
AT2G15900			Phox-associated domain;Phox-li...		Lus10027939 [exp]	14.8	0.6733
AT1G02120		VAD1	VASCULAR ASSOCIATED DEATH1, GR...		Lus10028209 [exp]	27.4	0.6504
AT2G35060		KUP11	K+ uptake permease 11, K+ upta...		Lus10036221 [exp]	36.3	0.6376
AT3G33530			Transducin family protein / WD...		Lus10043261 [exp]	46.0	0.6192
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Lus10034472 [exp]	73.6	0.6200
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	85.6	0.5963
AT5G43130		TAF4, TAF4B	TBP-associated factor 4B, TBP-...		Lus10018701 [exp]	91.8	0.5838
AT1G50120			unknown protein		Lus10013430 [exp]	115.7	0.5789
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10000500 [exp]	116.8	0.5264

Compare expression of checked genes

Lus10038666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.