Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 424 / 8e-143 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT1G20480 411 / 3e-137 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 409 / 1e-136 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT4G05160 404 / 5e-135 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 402 / 3e-134 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 382 / 5e-126 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 369 / 3e-121 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 305 / 8e-97 ACOS5 acyl-CoA synthetase 5 (.1) AT1G65060 301 / 5e-95 4CL3 4-coumarate:CoA ligase 3 (.1.2) AT3G21240 299 / 3e-94 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037934 [exp] 1067 / 0 AT1G20510 462 / 2e-157 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 427 / 1e-143 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 430 / 4e-142 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 399 / 1e-132 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 393 / 1e-130 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 386 / 9e-128 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 371 / 4e-122 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 366 / 4e-120 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 354 / 2e-115 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230200 [exp] 710 / 0 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 706 / 0 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 427 / 1e-143 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 420 / 4e-141 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 393 / 1e-130 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 385 / 2e-127 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 384 / 4e-127 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 379 / 4e-125 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 374 / 4e-123 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094900 [exp] 368 / 9e-121 AT5G63380 604 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10038667 pacid=23143156 polypeptide=Lus10038667 locus=Lus10038667.g ID=Lus10038667.BGIv1.0 annot-version=v1.0 ATGTCACTTGATCAAGAACCATGGAACACCGCCATTCCGGCCACTCAACCAAGCAATCCCCAGTCGGAGCTCACAAACTCCGGTTACGATCCCCACACCG GAATCTACCATTCACTAGTCCACCTTCCCAAAGACGGCCAGATCCCCACCGCCACCAATTTGGACACAGCAACATACGTCCTCTCACGGTTCCCTCACCC AGACGTCTCCGAAACCAAAATTGCTCTAGTCGATTCCTTCACCGGCCATCAGCTCACCTACGGCCAACTCCACCGCTCCATTGCAGCCCTCGCCGCCGGC CTACGAGATGGCCTTGGAGTCCGAAAAGGAGAGGTGGTGCTTCTCCTGTCACCCAACTCCATCCTCTACCCTGCCATCTGTTTAGCCATCATGTCAGTGG GAGCAATTCTCACCCCTGCTAATCCTGTCAACACTAGCTCCGAAATCGTCAAACAGACCAACGACTCCGGAGCCAAACTCGTCATCTCCGATCCCGAACA GCTCCCCAAGCTGGACTCACTGCTAGTCGGAGGAATCATCCCGGTAATGACCACCACTAGGACGTCGAATCTCGGTTATGTCTCATGCGAAGAATTAATC GACTGCTGCTCCGACGCCGATCCATTGCCTAAGGTTTCGATTTCGCAATCGGAGACGGCGGCGATCCTCTACTCTTCGGGGACGACCGGAGCCAGCAAGG GAGTAATCCTGACTCATTCCAACTTCATCTCCGTGATGACGATGATGAAATGGTCCGTGGAAGCAATGTCCGCCAAGGACGAAACGTTCCTCTGCTTAAT CCCGATGTTCCACATCTACGGCATGGCTTTCTTCGCGCTAGGCTTACTGACATTAGGGATTAAAACAGTGTTGATGCCCAAATTCGACCTGAAATCGATG TTGCAATCAATCGAAACGCACCGCGTCAACAACTTACCTGTCGTCCCGCCGGTGATTCTCGGGATGGTGAAGTTAGCGGACCAATTAGGGTTCGATTTGA GCTCGCTGCGGCGAGTCGGGAGTGGGGCAGCACCGTTAGGCGGAGAATTAGTGAAGGAGTTTCGAAGGAGGTTCCCATGGGTGGAATTGCGGCCAGGATA CGGGTTGACGGAGAGCTGCGGAGCAACGACGATGTTTGCCGGGGGTGAGGAGGCGAAGCGAAAGCCAGAGGGGTGTGGACGGTTGTTGCCGTGTTTTGAG GCGAAGGTTGTGGATGTAGAGACAGGGGAAGCTATGGCGCCCTACGCACGTGGGGAGCTGTGGGTGAAGAGCCCGACGGTGATGAAGGGGTACCTGAGGA GTGAAGAGGCGACGACGGAAGCGGTTGATTCGGAAGGGTGGTTGAGGACTGGGGATCAGTGTTATTTCGACGGAGAAGGGGTTTTTTATGTTGTTGATCG GATCAAGGAGCTGATCAAGCATAATGGGTATCAGGTGGCTCCGGCGGAACTGGAAGCGATACTGTTGAAACATCCTCAAGTAATGGACGCTGCAGTGATA CCAGTTAAAGATGCGGCGTCGGGAGAAATACCAATGGCGTATGTTGTCGGAGCTTCCGGCGGTGAAGCAGGACTCACTGAACATCAACTCTGTTGGGGCG CTAGCGGAAATTTTGTCGCCGGTCAGGTTGCTCCATACAAGAAAGTGAGGAGGGTTGCCTTCATCGACGCGATTCCAAAGTCAGCAGCTGGCAAGATTTT GAGGAAGCAACTCATTTCGCTCAACCAACACCAACTTACATCAAAGCTCTGA
AA sequence Show only first row Show all	>Lus10038667 pacid=23143156 polypeptide=Lus10038667 locus=Lus10038667.g ID=Lus10038667.BGIv1.0 annot-version=v1.0 MSLDQEPWNTAIPATQPSNPQSELTNSGYDPHTGIYHSLVHLPKDGQIPTATNLDTATYVLSRFPHPDVSETKIALVDSFTGHQLTYGQLHRSIAALAAG LRDGLGVRKGEVVLLLSPNSILYPAICLAIMSVGAILTPANPVNTSSEIVKQTNDSGAKLVISDPEQLPKLDSLLVGGIIPVMTTTRTSNLGYVSCEELI DCCSDADPLPKVSISQSETAAILYSSGTTGASKGVILTHSNFISVMTMMKWSVEAMSAKDETFLCLIPMFHIYGMAFFALGLLTLGIKTVLMPKFDLKSM LQSIETHRVNNLPVVPPVILGMVKLADQLGFDLSSLRRVGSGAAPLGGELVKEFRRRFPWVELRPGYGLTESCGATTMFAGGEEAKRKPEGCGRLLPCFE AKVVDVETGEAMAPYARGELWVKSPTVMKGYLRSEEATTEAVDSEGWLRTGDQCYFDGEGVFYVVDRIKELIKHNGYQVAPAELEAILLKHPQVMDAAVI PVKDAASGEIPMAYVVGASGGEAGLTEHQLCWGASGNFVAGQVAPYKKVRRVAFIDAIPKSAAGKILRKQLISLNQHQLTSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10038667 [exp]	0	1
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Lus10007117 [exp]	1.7	0.8041
AT3G42150			unknown protein		Lus10031451 [exp]	4.7	0.7822
AT3G51070			S-adenosyl-L-methionine-depend...		Lus10041804 [exp]	7.4	0.7106
AT1G31860		HISN2, AT-IE	HISTIDINE BIOSYNTHESIS 2, hist...		Lus10043483 [exp]	7.9	0.7819
AT3G27210			unknown protein		Lus10034680 [exp]	11.1	0.6254
AT5G19730			Pectin lyase-like superfamily ...		Lus10034981 [exp]	11.7	0.7765
					Lus10021453 [exp]	12.7	0.7682
					Lus10015310 [exp]	14.2	0.7552
AT4G36950		MAPKKK21	mitogen-activated protein kina...		Lus10034246 [exp]	15.0	0.7448
AT3G45070			P-loop containing nucleoside t...		Lus10003068 [exp]	17.2	0.7743

Compare expression of checked genes

Lus10038667 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.