Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55620 335 / 3e-118 eIF6A, EMB1624 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) AT2G39820 268 / 6e-92 eIF6B eukaryotic initiation factor 6B, Translation initiation factor IF6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037938 [exp] 355 / 5e-126 AT3G55620 473 / 4e-172 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229800 [exp] 345 / 2e-122 AT3G55620 472 / 2e-171 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) Potri.007G064800 [exp] 327 / 4e-115 AT3G55620 454 / 2e-164 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) Potri.005G098700 [exp] 302 / 2e-106 AT3G55620 311 / 5e-109 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0197 [flax] [poplar] GME PF01912 [flax] [poplar] eIF-6 eIF-6 family
Representative CDS sequence Show only first row Show all	>Lus10038669 pacid=23142997 polypeptide=Lus10038669 locus=Lus10038669.g ID=Lus10038669.BGIv1.0 annot-version=v1.0 ATGGCGACTAGAAACAAAAACGGGCTTCTTGTTCCACACACCACCACTGATCAGGAGCTTCAGCACTTGAGAAACAGTCTCCCTGATTCAGTCGTTGTCC AGAGGATAGAGGAAAGATTGTCAGCACTCGGTAACTGTATCGCTTGTAATGACCATGTTGCTCTTGCACATATTGATCTCGACCGGGAAACTGAAGAGTT GATTGCTGATGTCCTTGGAGTTGAAGTTTTCAGACAGACTATTGCTGGGAATGTTCTTGTTGGAACCTATTGTGCCTTCTCTAACAGAGGTGGCTTGGTC CACCCGCACACTTCAATGGAAGACATGGATGAGCTTTCCACTCTTCTCCAAGTCCCTTTGGTTGCAGGGACTGTTAACCGTGGCTGTGATGTTATAGGAG CAGGAATGACAGTAAATGACTGGACAGCATTCATTGGTTCGGACACTACAGCAACAGAGCTATCTGTTATTGAGAGTGTATTCAAGTTGAGGGAAGCTCA ACCAAGTGCCATCATGGACGAGATGAGGAAGTCTCTGGTTGACACTTACGTCTGA
AA sequence Show only first row Show all	>Lus10038669 pacid=23142997 polypeptide=Lus10038669 locus=Lus10038669.g ID=Lus10038669.BGIv1.0 annot-version=v1.0 MATRNKNGLLVPHTTTDQELQHLRNSLPDSVVVQRIEERLSALGNCIACNDHVALAHIDLDRETEELIADVLGVEVFRQTIAGNVLVGTYCAFSNRGGLV HPHTSMEDMDELSTLLQVPLVAGTVNRGCDVIGAGMTVNDWTAFIGSDTTATELSVIESVFKLREAQPSAIMDEMRKSLVDTYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10038669 [exp]	0	1
AT3G47840			Tetratricopeptide repeat (TPR)...		Lus10019098 [exp]	1.4	0.6793
AT1G75790		SKS18	SKU5 similar 18 (.1)		Lus10038672 [exp]	7.1	0.6755
AT2G25660		EMB2410	embryo defective 2410 (.1)		Lus10012415 [exp]	9.8	0.5913
AT2G42010		PLDBETA1	phospholipase D beta 1 (.1)		Lus10026377 [exp]	14.0	0.6346
AT5G09300			Thiamin diphosphate-binding fo...		Lus10033480 [exp]	15.2	0.6014
AT1G31360		MED34, ATRECQ2,...	ARABIDOPSIS THALIANA RECQ 2, ...		Lus10034749 [exp]	25.8	0.6156
AT5G18070		DRT101	DNA-DAMAGE-REPAIR/TOLERATION 1...		Lus10007548 [exp]	26.1	0.6212
AT1G05160		ATKAO1, CYP88A3	ENT-KAURENOIC ACID OXYDASE 1, ...		Lus10036670 [exp]	37.8	0.5597
AT5G35910			Polynucleotidyl transferase, r...		Lus10020293 [exp]	44.0	0.5673
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	44.9	0.5789

Compare expression of checked genes

Lus10038669 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.