Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10480 424 / 1e-136 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 424 / 2e-136 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT2G29120 318 / 1e-91 ATGLR2.7 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) AT5G27100 314 / 8e-91 ATGLR2.1 ARABIDOPSIS THALIANA GLUTAMATE RECEPTOR 2.1, glutamate receptor 2.1 (.1) AT2G29110 313 / 3e-90 ATGLR2.8 glutamate receptor 2.8 (.1) AT2G24720 295 / 4e-84 ATGLR2.2 glutamate receptor 2.2 (.1) AT5G04410 277 / 8e-81 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT2G29100 284 / 4e-80 ATGLR2.9 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1) AT2G24710 281 / 1e-79 ATGLR2.3 glutamate receptor 2.3 (.1) AT3G51480 280 / 5e-79 ATGLR3.6 glutamate receptor 3.6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037939 [exp] 664 / 0 AT3G10490 415 / 2e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 522 / 1e-174 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10040422 [exp] 448 / 2e-146 AT3G10480 263 / 6e-84 NAC domain containing protein 50 (.1.2.3) Lus10013952 [exp] 332 / 1e-97 AT2G29120 377 / 1e-116 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10026235 [exp] 328 / 4e-95 AT2G29120 912 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10003436 [exp] 320 / 3e-92 AT2G29120 867 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10013976 [exp] 312 / 2e-90 AT2G29110 372 / 1e-114 glutamate receptor 2.8 (.1) Lus10020109 [exp] 291 / 1e-82 AT2G29120 822 / 0.0 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Lus10031560 [exp] 286 / 6e-81 AT2G32400 1008 / 0.0 GLUTAMATE RECEPTOR 3.7, glutamate receptor 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G374600 [exp] 624 / 0 AT2G29120 452 / 9e-145 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375200 [exp] 621 / 0 AT2G29120 436 / 8e-139 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374300 [exp] 611 / 0 AT2G29120 422 / 1e-133 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374700 [exp] 605 / 0 AT2G29120 446 / 1e-142 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375000 [exp] 600 / 0 AT2G29120 415 / 1e-130 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G375100 [exp] 600 / 0 AT2G29120 419 / 3e-132 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.001G374800 [exp] 599 / 0 AT2G29120 426 / 6e-135 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.010G229700 [exp] 543 / 0 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.014G028500 [exp] 432 / 5e-134 AT2G29120 360 / 5e-110 GLUTAMATE RECEPTOR 2.7, glutamate receptor 2.7 (.1) Potri.004G052400 [exp] 382 / 1e-114 AT2G29100 429 / 3e-135 GLUTAMATE RECEPTOR 2.9, glutamate receptor 2.9 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0144 [flax] [poplar] Periplas_BP PF01094 [flax] [poplar] ANF_receptor Receptor family ligand binding region CL0030 [flax] [poplar] Ion_channel PF00060 [flax] [poplar] Lig_chan Ligand-gated ion channel CL0177 [flax] [poplar] PBP PF00497 [flax] [poplar] SBP_bac_3 Bacterial extracellular solute-binding proteins, family 3 CL0177 [flax] [poplar] PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10038670 pacid=23143002 polypeptide=Lus10038670 locus=Lus10038670.g ID=Lus10038670.BGIv1.0 annot-version=v1.0 ATGGTTGACCATTTGCACTTGGTTTTGGCAGCCATAGCGACCACCTTCCTGTTACTGCTTGCTACCATCACATCTACAGATGCTGCAACTAGAATCGGTG CCATTGTCGATGAAACTTGTCGAATCGGTAAAGAGCAGACTCTTGCTATGCAGATGGCATTGCAAGACTTCCATGATTCCACCAATACAAGCCTGGTTTT TCATCTTCACATCAAGAATTCTTCAGGGGAGCCACTTCAGGCTGCCCTTTCAGCACAAGAGCTCGTTATGAACTCACAAGTCAATGCAATAGTTGGACCA AGTTCATGGGAGGAGACATCTCTAGTTGCTGAAATTGGGAGCAAGAACCAAATCCCAATCCTGTGTTTATCAGATTCAACTCCAAGGTGGGCAAGGGAGA GATGGCCCTTTCTGGTTCAATTCTCATCAAGCAAGCCTTCACAAATGAAAGCCATAGCCTCCATCATACACTCATTTGGGTGGCACCAAGTTTCTGTCAT CTGTGAAGATTTGGAATCTTCGACCAAGGCGGTTCTTCAACTATCTGATGCTCTCAGACAGGCAAATGGAGAGATTATCGATGTTGTCACCCTCCCTCCT TTCTCCACTTCTTCGTCGCTGTTATTCAACGAGCTGGAAACCCTCAGAATCCGGCCTTGTCGAGTCTTTGTGGTTCATATTTCCTCTTCTACGCTGGCTG CCCGCTTATTTGAAAAGGCCAAAGACATGAAAATGATGGAAAGAGACTACGTTTGGATAGCCACGGATGCATTGACAAGTCTTGTCCATTCATTTGATCC CTCCACCATCTCAGCAATGCAAGGAGTTCTAGGAGTGAAGGGTCATTACCCGCAAACCAGCCAGAGTTTACAGTCTTTCTACAAGAGGTTCCGCACAAGG TTCAGCTTAGTACATCCTGATGAGCACAGCCATGAGCATGGAATCTTTGCAGCTGAGGCTTACGATGCTATATGGACACTAGGCCTTTCACTCTTGGGAG ACAGTAACTCAAAAGGACGGCAGAATTTGTTGAATAAGTTACTGGCTTCCAACTTCAATGGCTTACTTGGGAAAGTTCAGTTCACTATGCAGATGGCAAA TCCAGTCAACACATTTGAGATCGTAAATGTGATAGGAAAGAGCTATGCTACGTTTTTCTCATCCATGAGAGACATCACCATGGGACAACAAGTTGTTTGG CCGGGAAGGCCTTGGTATATCCCTAGGGGATGGGCTCCTTCACCAATTGACGAGCCTCTAAGAATTGGAGTTCCAACTGAGTCCATATTCAAGCAATTTG TTAATGTCGAATTCGATCCAAGTCGAAACACAGTCGGGTCTGTCAAAGGATATGCAATTGAGTTGTTTGAAAAGGCTGTGGAGCAGTTGCCATTCTATTT ACCTTACAAATTTATTCCCTTCAATGGAACCTACACTGCCTTGGTACAACAAATCTACCTCAAGAATGTTGAGGCAGTTGTTGGGGACATAGGAATAGTC ACTAGCAGGCTTCCAATCGCAACTTGTTATGATAGTCCCGCTGCAATCGAAGAAAGTCAACAGAGCTTGCTTATCACAAAGCCTTTCACTATGTCATTGT GGCTTCTCATCCTCGTCCTAAACATGTACAACGGATTTGTCGTATGGATGATCGAGCGAGACAAATCTCTAGAGCCGAAGGGCTCTCTGCTCAATGAAGT AGGAGTAATGATGTCACTATCCTTCACCACACTCTTCTCTTTACAAGGCTCAAAGCTTACAAGCAACTTATCCCGAATGACGATGGTGGTATGGTTGTTC ATGGCACTGGTGATCACACAGACTTACACGGCCAACCTTTCCAGCATCCTCACAGTGCAAGAACTCGAAGCAGTCATCGACAGCGTAGAATCGATTCAAA GGAGTCACGCTGACATTGGCTACCTGCATGTGACATACGTGGCAAGGTACCTAGAAGAAGTGCTGCATTTCAACCCAAAGAAGGTGAAGAACTACACTTC CCCCGAGGCATCCATGACAGACTTACAGAACGGAGTGATTGCAGCAGTGTTTATGGAAAGGCCGTGGGCGAAGATTCTCCTTGCTAGATACTGTACCGGG TTCACCATAGCCAAACAGTCTTTCAAAGTTGGAGGCTTTGGATTCGCGTTTGCCAAAGGATCTCCATGGCTGCCATACATGACAGAGGCGCTAGTGAAGG TGACTGAAAGTGGGCAACTGAGGGATTTGGAGAGAGACATGATTACTTCTCAAAAATGTGTTGGTAAAAAGTTGCTTGGTAGTAATAGTGGTGATTCTTC ATCTTCCAGCAATTCTGATAGCATTGGAGCAGACAGTTTTTGGATGTTGTTCGTATTTACAGCAGGGACATCTACTCTGGCTCTCGTCATCTTCCTGTTC TACTGTACGGATAATGATGTCAATGCACTGCCTTTCCCTTGGGTGTGTTTTTTGGTATCTATTCTATTCTATGGGTTAGCTGCGGTTCCTTCCAAAAGAA CGAACCAACCAAATTGCTTGCAATTGAAGGTACCTTTCCTTTCTCATCAATCATCAATTCTCCCTCTTTCTCTCCCACCATCCCCCCCCCNNNNNNNCGG CGGCGTTTTAGCTCCTGGGTTCCGATTTCACCCGACAGATGAGGAGCTCGTTATCTATTACTTGAAGCGGAAGGTTGGGAACAAGCCCGTCCGCTTCAAC GCCATAGCTGAAGTCGATATCTACAAGAATGAACCTTGGGACCTTGCAGACAAGTCAAGATTGAAAAGCAGAGACCAAGAGTGGTACTTTTTCAGTGCAT TGGACAAGAAATATGGCAATGGAGCTAGAATGAACAGAGCCACCGGCAAAGGTTACTGGAAAGCCACCGGGAAAGACCGGGAAATTCGTCGAGACAACCA GCTTTTAGCTATGAAGAAGACCCTTGTGTTTCATAGTGGACGCGCCCCTGGTGGCCAGCGCACTAATTGGGTTATGCATGAGTACCGTTTAGTTGACGAG GAGTTGGAAAGAATTGGCACTTTGCAGGGTGATTCATATGTTCTGTGTAGAGTGTTTCACAAGAATAATATAGGACCACCAAATGGAAACCGCTATGCTC CTTTCTTGGAGGAAGAGTGGGATGATAGTCGAGCAGTTCTTGTCCCTGGCGAAGATGTTGCAGATGAAGTTGTTGCTTGCAATGAGACGAATCACATGGA GCAGGATAAGTATTGTATAACCAAAGAAACTTTTGATGTGAACGAAGTCCCAATCTTAACCAGGGATCTTCTGTCCCTTTGCAAGAATGAAAGTGTGGAG ATGGAGGGTGATGCTCCTATGTGCGTCCTCAACACCGAAGCTCCTTTCCCACTAATCCAATACAAAAGAAGAAAGCATGGCCATGATTATGATTCCAATG GTTCAGAGAAGTCAAGAACTACTCAGGACCTTTGCTCATCCACCACAACGACAGCTACTACCACCACTAACACAACAGATACGATGATGACGACAACTGC AGCTACCAATACTGCTATATCCGCACTTTTAGAGTTCTCCCTTATGGAGCCTAAAGAGCGGACTCCTCCTTCCCCGAAAGAAACTGCATTTCAGCCTGCT AGCCTTGAGTCTTTGGTCTCTTCTGGGTGCATGAAGTTGATCAACGACCTGCAGCGCGAGGTCCACAAGGTCTCAGTTGAGAGGGAGACGCTGAAGATGG AAGTGATGAGCGCTCAAGCTATGATCTACATTCTCCAGACGAGAATCGATGCTCTGAACAAGGAGAATGGGGATCTGAAGAGGAGCCTGAGATAG
AA sequence Show only first row Show all	>Lus10038670 pacid=23143002 polypeptide=Lus10038670 locus=Lus10038670.g ID=Lus10038670.BGIv1.0 annot-version=v1.0 MVDHLHLVLAAIATTFLLLLATITSTDAATRIGAIVDETCRIGKEQTLAMQMALQDFHDSTNTSLVFHLHIKNSSGEPLQAALSAQELVMNSQVNAIVGP SSWEETSLVAEIGSKNQIPILCLSDSTPRWARERWPFLVQFSSSKPSQMKAIASIIHSFGWHQVSVICEDLESSTKAVLQLSDALRQANGEIIDVVTLPP FSTSSSLLFNELETLRIRPCRVFVVHISSSTLAARLFEKAKDMKMMERDYVWIATDALTSLVHSFDPSTISAMQGVLGVKGHYPQTSQSLQSFYKRFRTR FSLVHPDEHSHEHGIFAAEAYDAIWTLGLSLLGDSNSKGRQNLLNKLLASNFNGLLGKVQFTMQMANPVNTFEIVNVIGKSYATFFSSMRDITMGQQVVW PGRPWYIPRGWAPSPIDEPLRIGVPTESIFKQFVNVEFDPSRNTVGSVKGYAIELFEKAVEQLPFYLPYKFIPFNGTYTALVQQIYLKNVEAVVGDIGIV TSRLPIATCYDSPAAIEESQQSLLITKPFTMSLWLLILVLNMYNGFVVWMIERDKSLEPKGSLLNEVGVMMSLSFTTLFSLQGSKLTSNLSRMTMVVWLF MALVITQTYTANLSSILTVQELEAVIDSVESIQRSHADIGYLHVTYVARYLEEVLHFNPKKVKNYTSPEASMTDLQNGVIAAVFMERPWAKILLARYCTG FTIAKQSFKVGGFGFAFAKGSPWLPYMTEALVKVTESGQLRDLERDMITSQKCVGKKLLGSNSGDSSSSSNSDSIGADSFWMLFVFTAGTSTLALVIFLF YCTDNDVNALPFPWVCFLVSILFYGLAAVPSKRTNQPNCLQLKVPFLSHQSSILPLSLPPSPPXXXGGVLAPGFRFHPTDEELVIYYLKRKVGNKPVRFN AIAEVDIYKNEPWDLADKSRLKSRDQEWYFFSALDKKYGNGARMNRATGKGYWKATGKDREIRRDNQLLAMKKTLVFHSGRAPGGQRTNWVMHEYRLVDE ELERIGTLQGDSYVLCRVFHKNNIGPPNGNRYAPFLEEEWDDSRAVLVPGEDVADEVVACNETNHMEQDKYCITKETFDVNEVPILTRDLLSLCKNESVE MEGDAPMCVLNTEAPFPLIQYKRRKHGHDYDSNGSEKSRTTQDLCSSTTTTATTTTNTTDTMMTTTAATNTAISALLEFSLMEPKERTPPSPKETAFQPA SLESLVSSGCMKLINDLQREVHKVSVERETLKMEVMSAQAMIYILQTRIDALNKENGDLKRSLR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10038670 [exp]	0	1
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10033857 [exp]	1.0	0.9000
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	3.5	0.8426
AT2G28105			unknown protein		Lus10021424 [exp]	3.5	0.8343
AT3G04670	WRKY	ATWRKY39, WRKY3...	WRKY DNA-binding protein 39 (....		Lus10014745 [exp]	6.6	0.8312
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10038693 [exp]	6.7	0.8218
AT1G68640	bZIP	PAN	PERIANTHIA, bZIP transcription...		Lus10041475 [exp]	7.1	0.8258
					Lus10009774 [exp]	7.1	0.8201
AT5G41610		ATCHX18	cation/H+ exchanger 18, ARABID...		Lus10017541 [exp]	10.7	0.7996
AT3G13670			Protein kinase family protein ...		Lus10042455 [exp]	11.2	0.8141
AT5G50600		ATHSD1	hydroxysteroid dehydrogenase 1...		Lus10043187 [exp]	11.4	0.7788

Compare expression of checked genes

Lus10038670 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.