Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04390 119 / 6e-30 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 107 / 1e-25 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 84 / 6e-18 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 78 / 7e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G53600 56 / 5e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G49930 56 / 8e-09 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G37430 53 / 3e-08 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT2G28710 52 / 6e-08 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G59820 50 / 2e-07 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT1G02040 52 / 3e-07 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037942 [exp] 316 / 6e-104 AT5G04390 198 / 2e-59 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 85 / 4e-18 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 84 / 6e-18 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 76 / 2e-15 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10021509 [exp] 74 / 3e-15 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 71 / 3e-14 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 69 / 3e-13 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 65 / 6e-12 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 61 / 1e-10 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G004800 [exp] 131 / 9e-35 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.010G229400 [exp] 125 / 7e-33 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 121 / 3e-31 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 120 / 1e-30 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 89 / 1e-19 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 78 / 4e-16 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 61 / 1e-10 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 59 / 3e-10 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 54 / 2e-08 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G027700 [exp] 54 / 4e-08 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10038674 pacid=23143086 polypeptide=Lus10038674 locus=Lus10038674.g ID=Lus10038674.BGIv1.0 annot-version=v1.0 ATGGAGACCAAGGAAGTATCCACAGTGGGCGCCCCCACCGTAGAGCCAGTTATCCGGGCGACGGCAGAGGAGGTGGAGGAGGTGAAGGCGGATACGGTCA TGCATATTAATAAGGAAGAAGAAGTACTCCCGCCGCCACTGCCGTCGCCCAATGATGGCATTACCGTACTGAATCCAGTCCCCATTACCCAGATCATTAA GGGAAAGAGAACCAAGAGGCAACGGGTGCGGTCACCGGTCGCTAGTGACTTCTCATCCATTGGAGATGACGTCGACGATGATTATGTTTACGAGGACGAC GAGGAGATTATAGATGATGATTCCAGGTCATCATCCGTACAGCTTCAACCACCGACAAAGGAAGAGGAGAACATGGCGAATTGCTTGATCCTCCTTGCCC AGGGAGTAAATGAGACAGGAGAGATAGGAGCGGGCGGGCCACCGGGGGCCGCCCGCCACTGCAGTGGCGGGGGAGGAGGAGGAGGAGGTGGGAAGGCGGG TTACTATGTTTATGAATGCAAAACATGCAGCAGGACATTTCCGTCATTTCAGGCACTCGGAGGACACCGTGCCAGCCACAAGAAGCCCAGGAACATTAAC AATAATAACAGCTCCTCCTCTATGTTGTCGATGATGATTGGCGGCGGCGAACATATTAACAAGACATTGAACAACAACAACCACCACATTAACGACAGTA TAAGGGACATGAATTCTTGTCTCAACCTCCAACTGAACAGCGGCGGCGGCAGGGTCAACGGTGGCGGCTTTACCAGCTTTTACAACAACATTAATAGGAC ATCGTCAATGTTTAACAACAACAAGGGGACGATGAACAACAACAACAACAGTAGTAGTAAGGTGCACGAGTGCGCAATCTGCGGCGCGGAGTTCAACTCC GGGCAGGCATTGGGAGGCCACATGAGGAGGCACAGGGCTCCTGCTGCTTCCGCTGCACCTCCTTCTCCCGCCGCCGCCGGCTTTTCGCTTTTAAATAATA ATACTAATAGAAACGCCCAGAGTTTTGTTAACGGTAACGGTTATCATAACCATAACAACGGTAATAATAACCGCGACGGCGGCTATGGCGGAAGCAGCAG CAACAACAACAATAACAATACAAATGGGAAGAGAAGGAGTATGTCGTTGGAGTTGGATCTCAATCTACCAGCGCCAGAGGAAAAGCAACAACAGCAGCAG ATACCACCTCCATCGCCGCAGAAGAAGCCGTCTCTTGTGTTTCAAAGCCCAGCTTTGGTTGATTGCCATTACTAA
AA sequence Show only first row Show all	>Lus10038674 pacid=23143086 polypeptide=Lus10038674 locus=Lus10038674.g ID=Lus10038674.BGIv1.0 annot-version=v1.0 METKEVSTVGAPTVEPVIRATAEEVEEVKADTVMHINKEEEVLPPPLPSPNDGITVLNPVPITQIIKGKRTKRQRVRSPVASDFSSIGDDVDDDYVYEDD EEIIDDDSRSSSVQLQPPTKEEENMANCLILLAQGVNETGEIGAGGPPGAARHCSGGGGGGGGGKAGYYVYECKTCSRTFPSFQALGGHRASHKKPRNIN NNNSSSSMLSMMIGGGEHINKTLNNNNHHINDSIRDMNSCLNLQLNSGGGRVNGGGFTSFYNNINRTSSMFNNNKGTMNNNNNSSSKVHECAICGAEFNS GQALGGHMRRHRAPAASAAPPSPAAAGFSLLNNNTNRNAQSFVNGNGYHNHNNGNNNRDGGYGGSSSNNNNNNTNGKRRSMSLELDLNLPAPEEKQQQQQ IPPPSPQKKPSLVFQSPALVDCHY

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G28200	C2H2ZnF		C2H2-type zinc finger family p...		Lus10038674 [exp]	0	1
AT1G03220			Eukaryotic aspartyl protease f...		Lus10021938 [exp]	3.7	0.8893
AT3G11980		FAR2, MS2	MALE STERILITY 2, FATTY ACID R...		Lus10016208 [exp]	4.7	0.8879
AT5G08391			Protein of unknown function (D...		Lus10015770 [exp]	11.0	0.7968
AT1G09570		FHY2, HY8, FRE1...	ELONGATED HYPOCOTYL 8, FAR RED...		Lus10007594 [exp]	11.5	0.8861
AT5G19730			Pectin lyase-like superfamily ...		Lus10041815 [exp]	11.7	0.8707
AT2G17080			Arabidopsis protein of unknown...		Lus10014446 [exp]	13.0	0.8733
AT1G60783			unknown protein		Lus10006204 [exp]	13.7	0.8406
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030904 [exp]	13.7	0.8638
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10012893 [exp]	14.1	0.8593
AT5G35740			Carbohydrate-binding X8 domain...		Lus10012324 [exp]	19.6	0.8587

Compare expression of checked genes

Lus10038674 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.