Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04360 1200 / 0 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1) AT4G09020 103 / 3e-22 ATISA3, ISA3 isoamylase 3 (.1) AT2G39930 71 / 4e-12 ATISA1, ISA1 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) AT1G03310 45 / 0.0003 ATISA2, ISA2, DBE1, BE2 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037943 [exp] 454 / 6e-151 AT5G04360 402 / 6e-131 PULLULANASE 1, limit dextrinase (.1) Lus10000060 [exp] 208 / 5e-63 AT5G04360 143 / 5e-41 PULLULANASE 1, limit dextrinase (.1) Lus10036474 [exp] 77 / 4e-14 AT4G09020 1005 / 0.0 isoamylase 3 (.1) Lus10021586 [exp] 76 / 9e-14 AT2G39930 1211 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Lus10017150 [exp] 74 / 4e-13 AT2G39930 723 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229300 [exp] 1296 / 0 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1) Potri.002G100900 [exp] 109 / 4e-24 AT4G09020 1111 / 0.0 isoamylase 3 (.1) Potri.018G132500 [exp] 73 / 7e-13 AT2G39930 1217 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.006G070800 [exp] 72 / 2e-12 AT2G39930 1212 / 0.0 ARABIDOPSIS THALIANA ISOAMYLASE 1, isoamylase 1 (.1) Potri.002G219900 [exp] 58 / 3e-08 AT1G03310 919 / 0.0 BRANCHING ENZYME 2, ARABIDOPSIS THALIANA ISOAMYLASE 2, debranching enzyme 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF02922 [flax] [poplar] CBM_48 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CL0369 [flax] [poplar] GHD PF11852 [flax] [poplar] DUF3372 Domain of unknown function (DUF3372)
Representative CDS sequence Show only first row Show all	>Lus10038675 pacid=23143127 polypeptide=Lus10038675 locus=Lus10038675.g ID=Lus10038675.BGIv1.0 annot-version=v1.0 ATGGCTCTCGCGCTTTCCTTCCCGCCATTACTTTCCACCCTCTCTCCATCATCAACAAGAACAGCTCCTCTTCTTCGACTTTCTAATCTCTCTTCTCATC ATTGCCCATTGCACTCTGCTCACAGCTCAAGTCACTTACCCTTCCCCCGCTTTTCGACTGCTTCGCAATACCCATTTCTCCGTCGTTCGTCTTCCATGCC TGCCGAGGTCTCCACCGCCCCTTCTCAGTTTGAGGATTGCTTCTTGTACTCAAAGGCTTTTTGGGTTACTGAATCCGTGATCGCCTGGAATGTAGACGTC GGAGATGGGCGTTGCTGTTTGTATGCTAGCTGGACTGCTTCTTTGTCTGCTACGGATGATGGATTTCAAGGCTATGATGCGAGGATTGAGATAGTTGAAG ACAGGGACGGCCTCCCTGCGAATGTGGTTGAAAAGTTTCCTCATATTCGATATTACAAGGCTTTCAGAGTTCCTGCTGGGGTGGATGTAAATTCTTTACT CAAAAGCCAGTTGGCTGTTGCCGCCTTTAGCCCTGATGGGAAATGCAGCGATGCCAGTGGGTTGCAGTTGCCCGGTATCTTAGATGAGCAGTTTTCATAT GATGGCCCTCTCGGTGCATGCTACTCAGAGGATGCTGTCTCACTCTACCTATGGGCTCCAACTGCTCAAGCAGTGCGTGCTTGCATCTATAGTGACCACT ACAGTACTGAACCAAAGGAAGTTGTTGAGCTGAAAGAGATGAATGGTGTTTGGAGTATTGTAGGGCCTAAGAATTGGGAAGGCTGTTATTACACTTATGA AAGCAGGCTTTCATCTGATGGCCAAAGAACATTGCTGGTGGATCTTGGATCAAATGGTTTGAAGCCTGAAGGTTGGGATAAATTAGCTGATGATAAGCCT ACTATTGTCTCCTTCTCAGACATAACTTTATACGAGTTGCACATAAGGGATTTTAGTGCATATGATCAAACCGTGGATCCAGGCATCAGAGGTGGCTACC TAGCTTTCACGTTGAAGGGAAATGTCTGTAACCTCCTATGCTTGAAGGACTCTGCAGGTGTACATCATTTAAAGAAATTATCAAATGCTGGAATCACTCA TGTGCATCTCTTGCCGACTTTCCATTTTGCTGGAGTCGATGATGTTAAGGAGAACTGGAAATCCATTGATGAAAAGATGCTGGAAAATCTGCCTCCAGAT TCAGATGAACAACAAGCTCAAGTAACTGAAATCCAGAACAATGATGGTTACAATTGGGGGTACAATCCTGTTCTCTGGGGTGTGCCAAAGGGAAGTTATG CAAGTAACCCAAATGGCCCAACCCGTATAACAGAGTTCAGAAAGATGGTTCAGGCACTTAATCGTATTGGCCTTCGTGTTGTCTTAGATGTTGTATACAA CCATTTACAAGGAAGTGGTCCGTTTCATGTTGATTCAGTTCTTGATAAGATCGTTCCAGGTTATTATCTGCGGAGGAACACTGCTGGTCTCATTGAGCAT AGTACATGTATGAACAACACTGCCAGCGAGCATTATATGGTTGAGCGCTTGATCATTGATGACCTTTTGAACTGGGTAGTCAACTATAAGGTGGACGGCT TCCGCTTTGACCTTATGGGTCATATAATGAAACATACAATGGAGAAGGCAAAAGCTGCTCTATGCAGTCTCACTAAGGAAAAGGATGGAATCGATGGATC AAGTGTCTACTTATATGGTGAAGGTTGGGACTTTGGTGAAGTTTCACAAAATGGACGTGGAATAAATGCATCTCAATCCAATATTTCTGGGACTGGAATA GGAAGTTTCAATGACCGAATACGTGATGCGGTACTTGGTGGATCTCCTTTTGGAAATCCTCTTCAACAGGGATTTCTGACAGGCCTTATGCTGCAGAGCA GTCTACTCTCCTTAACAGCAGTGCTCATGTTGTCTATTCTTCAGCCTAATGGTCATGACCATGGTGGCAGAGACAATGAGGAGGCCATGCTTGCAACAGC AAAGGATCACATACAGGTCGGCATGGCTGCAAATTTGAGGGATTTTAAACTAATTGATCACCTTGGGAAGGAGGTGACAGGATCAGAAATTTTGACTTAT GGCGGCACGCCGGTTGCATATGCTTCATGTCCTGCAGAAACAATCAATTATGTTTCTGCTCATGACAATGAGACACTGTTTGACATCGTGAGCTTGAAGG GAATTCCATTTTTCCATGCTGGCGATGAGATGCTTCGCTCTAAATCACTCGACCGTGATTCATACAATTCCGGTGATTGGTTTAACAGGCTAGATTTCAC TTATAATACGAACAATTGGGGTGTCGGCCTTCCTCCGAAAGAGAAAAATGAAAGGAGCTGGCCATTAATAAAGCCCAGATTGGCTGATCCATCATTCAAA CCTCACAGAAAACATATCCTTGCGGCTGTTCAAAATTTTACTGATGTGTTACAGATTCGATATTCTTCACCACTGTTCCGTTTACCGACAGCCAAAGCTA TCCAGGAACGGGTGCGATTCCACAATGTTGGTCTTTGTTCAGTAGCTGGCGTTATAGTGATGAGCATTGAAGATGGTCATGCTGCCAATCCCGATTTACC TCAGCTAGATCAAACCTACTCCTGCATTGTAGTAATCTACAATGCTCAACCATGTGAGATATCATTTACCGACCCAGGTCTACAAGCCAGGGATTTCCGG CTCCATCCCGTTCAGGTGAAGACGAGTGATGAAGTGGTGAAGAAATCATCATATGATGCATCCTCCGGATGCTTCATTATACCGTCGAGGACAGCATCTG TGTTTGTGGACTGTCGGTAA
AA sequence Show only first row Show all	>Lus10038675 pacid=23143127 polypeptide=Lus10038675 locus=Lus10038675.g ID=Lus10038675.BGIv1.0 annot-version=v1.0 MALALSFPPLLSTLSPSSTRTAPLLRLSNLSSHHCPLHSAHSSSHLPFPRFSTASQYPFLRRSSSMPAEVSTAPSQFEDCFLYSKAFWVTESVIAWNVDV GDGRCCLYASWTASLSATDDGFQGYDARIEIVEDRDGLPANVVEKFPHIRYYKAFRVPAGVDVNSLLKSQLAVAAFSPDGKCSDASGLQLPGILDEQFSY DGPLGACYSEDAVSLYLWAPTAQAVRACIYSDHYSTEPKEVVELKEMNGVWSIVGPKNWEGCYYTYESRLSSDGQRTLLVDLGSNGLKPEGWDKLADDKP TIVSFSDITLYELHIRDFSAYDQTVDPGIRGGYLAFTLKGNVCNLLCLKDSAGVHHLKKLSNAGITHVHLLPTFHFAGVDDVKENWKSIDEKMLENLPPD SDEQQAQVTEIQNNDGYNWGYNPVLWGVPKGSYASNPNGPTRITEFRKMVQALNRIGLRVVLDVVYNHLQGSGPFHVDSVLDKIVPGYYLRRNTAGLIEH STCMNNTASEHYMVERLIIDDLLNWVVNYKVDGFRFDLMGHIMKHTMEKAKAALCSLTKEKDGIDGSSVYLYGEGWDFGEVSQNGRGINASQSNISGTGI GSFNDRIRDAVLGGSPFGNPLQQGFLTGLMLQSSLLSLTAVLMLSILQPNGHDHGGRDNEEAMLATAKDHIQVGMAANLRDFKLIDHLGKEVTGSEILTY GGTPVAYASCPAETINYVSAHDNETLFDIVSLKGIPFFHAGDEMLRSKSLDRDSYNSGDWFNRLDFTYNTNNWGVGLPPKEKNERSWPLIKPRLADPSFK PHRKHILAAVQNFTDVLQIRYSSPLFRLPTAKAIQERVRFHNVGLCSVAGVIVMSIEDGHAANPDLPQLDQTYSCIVVIYNAQPCEISFTDPGLQARDFR LHPVQVKTSDEVVKKSSYDASSGCFIIPSRTASVFVDCR

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10038675 [exp]	0	1
AT2G46915			Protein of unknown function (D...		Lus10007214 [exp]	3.2	0.8550
AT2G34090		MEE18	maternal effect embryo arrest ...		Lus10013927 [exp]	3.5	0.8363
AT4G10950			SGNH hydrolase-type esterase s...		Lus10008403 [exp]	7.9	0.7698
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10012285 [exp]	8.1	0.7685
AT5G19500			Tryptophan/tyrosine permease (...		Lus10036527 [exp]	8.5	0.8341
AT2G39930		ATISA1, ISA1	ARABIDOPSIS THALIANA ISOAMYLAS...		Lus10021586 [exp]	11.8	0.7716
AT5G19500			Tryptophan/tyrosine permease (...		Lus10041401 [exp]	12.5	0.8347
AT2G20050			protein serine/threonine phosp...		Lus10034955 [exp]	14.9	0.8173
AT4G18240		ATSS4, SSIV	ARABIDOPSIS THALIANA STARCH SY...		Lus10042837 [exp]	16.4	0.8250
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10030757 [exp]	20.5	0.7640

Compare expression of checked genes

Lus10038675 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.